PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pg.C_Chr_06.00010275 | ||||||||
Common Name | OT_ostta06g03980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C3H | ||||||||
Protein Properties | Length: 224aa MW: 24500.7 Da PI: 6.504 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.5e-09 | 125 | 148 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f r G+C++Gd+C+F+Hgp estExt_fgenesh1_pg.C_Chr_06.00010275 125 VPKCYAFER-GECNRGDSCRFSHGP 148 678******.*************96 PP | |||||||
2 | zf-CCCH | 23.4 | 1e-07 | 168 | 188 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C f+ G C+yGd+C+F+H+p estExt_fgenesh1_pg.C_Chr_06.00010275 168 CYAFQN-GNCSYGDSCRFSHDP 188 677777.*************86 PP | |||||||
3 | zf-CCCH | 20.7 | 7.2e-07 | 204 | 222 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C +a+ G C +Gd+C+F+H estExt_fgenesh1_pg.C_Chr_06.00010275 204 CYAWAE-GNCTRGDSCRFSH 222 999***.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13451 | 7.3E-21 | 75 | 120 | IPR025306 | Probable zinc-binding domain |
PROSITE profile | PS50103 | 14.436 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 122 | 148 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-7 | 125 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 128 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-4 | 164 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.887 | 167 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 167 | 188 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-5 | 167 | 189 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-5 | 168 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 198 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2 | 200 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 204 | 222 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016874 | Molecular Function | ligase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAEKKEKKEK KEKKEKKEKK EKRERSSDEE TADEVEDKRP KVEDAEEEEE DGFKVHKKSD 60 ADLSGKATIS TGNYEDITLN CRDCNGEFVF TVGEQEFYSS KGWTNQPTRC EPCKKAKKER 120 FGEDVPKCYA FERGECNRGD SCRFSHGPGS AAGRGGGGGG GGGGGGVCYA FQNGNCSYGD 180 SCRFSHDPNA PPSRPGSRGP PGKCYAWAEG NCTRGDSCRF SHE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022839293.1 | 1e-159 | Putative E3 ubiquitin-protein ligase,makorin-related | ||||
TrEMBL | A0A090M8R0 | 1e-158 | A0A090M8R0_OSTTA; Putative E3 ubiquitin-protein ligase,makorin-related | ||||
STRING | A0A090M8R0 | 1e-158 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3507 | 13 | 14 |
Publications ? help Back to Top | |||
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