PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.5.42.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 760aa    MW: 84973.3 Da    PI: 8.9009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.5.42.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-13853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W +I++ ++ ++++kqck rw+ +l
     e_gw1.5.42.1  8 GVWKNTEDEILKAAVMKYGKNQWPRISSLLN-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.61.9e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc  r+ k+l
     e_gw1.5.42.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPVVG--RTPSQCLTRYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.266257IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-18457IPR009057Homeodomain-like
SMARTSM007172.5E-14655IPR001005SANT/Myb domain
CDDcd001671.38E-111053No hitNo description
PfamPF139217.1E-141070No hitNo description
SuperFamilySSF466892.48E-2133106IPR009057Homeodomain-like
CDDcd116596.88E-2955106No hitNo description
SMARTSM007173.4E-1258105IPR001005SANT/Myb domain
PROSITE profilePS5129415.2258107IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-1358104IPR009057Homeodomain-like
PfamPF118316.7E-39402608IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MRIQIKGGVW KNTEDEILKA AVMKYGKNQW PRISSLLNRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPVVGR TPSQCLTRYE KLLDAACAKD DEYDAADDPR  120
RLRPGEIDPN PETKPAKPDA VDMAEDEKEM LAEARARLAN TKGKKAKRKA REKQLEEARR  180
LAELQKKREL KAAGIAHVRR AKRVRGVDYN AEIAFERKPD AVMYDTREED EAYAKAQSSK  240
VFKPVTVAEL EGKKSAKQID EESKKRELAR QKMHERRDMP GAVEQALKVN DASFTRRSKL  300
MLPTPQVSNQ ELEEIAKMGK AGLGLLDDGS ATPSSALLES YAPTPATSSG IAARTPLRTP  360
QVEGDAILRE AQAQAAHRNQ KSTLFGGGDK AAATMPTDFA GATPSRAKTA ATPSHSGVSS  420
QMGATPLLHG QTPIRDGLNI NDQYAAHFED LSTRERRAQT AATASSLKSA FMSLPKPQNE  480
YQIDLPDAPV EDERMEDAFV EDEADVRARE AAQLAEYQAM QMRKRSQAVQ RDLPRPVELK  540
PLEPLAEDEV SKLVNQEASM LLEHDIAKYG KKPKSAAALE DFDESYIESA RKLIETEADE  600
MLREQKTSRE DFTDAFVAAL ADERKKLIFV PSLNAQISVD DATKDQRLEA AKATFDRVRG  660
DMEKDAKQAA KLEQKCSLLT AGLQKRNGEL CKKLKKTVEE IKSLATEAAS YTILHVQEQR  720
AAPNRIEYWL DLIQTARARE QKLQQKFETL SRQVNAASA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-17727503791Cell division cycle 5-like protein
5xjc_L1e-17727503791Cell division cycle 5-like protein
5yzg_L1e-17727503791Cell division cycle 5-like protein
5z56_L1e-17727503791Cell division cycle 5-like protein
5z57_L1e-17727503791Cell division cycle 5-like protein
5z58_L1e-17727503791Cell division cycle 5-like protein
6ff4_L1e-17727503791Cell division cycle 5-like protein
6ff7_L1e-17727503791Cell division cycle 5-like protein
6icz_L1e-17727503791Cell division cycle 5-like protein
6id0_L1e-17727503791Cell division cycle 5-like protein
6id1_L1e-17727503791Cell division cycle 5-like protein
6qdv_O1e-17727503791Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417909.10.0predicted protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA4RWZ80.0A4RWZ8_OSTLU; Uncharacterized protein
STRINGABO962020.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]