PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9597_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 303aa    MW: 33307.1 Da    PI: 9.9084
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9597_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11555146
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                         +++WT+eE+  l+ +v ++G+g W+tI +          R+  ++k++w++
  cra_locus_9597_iso_1_len_1507_ver_3  5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 55
                                         79***********************************66**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.232158IPR017930Myb domain
SuperFamilySSF466891.79E-15271IPR009057Homeodomain-like
SMARTSM007177.3E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-14456IPR009057Homeodomain-like
PfamPF002491.1E-8555IPR001005SANT/Myb domain
CDDcd116603.18E-18656No hitNo description
SMARTSM005261.4E-13117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-18117197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-16118189IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.113119187IPR005818Linker histone H1/H5, domain H15
PfamPF005383.9E-9124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMSVMA  60
NGWGSRERAR LALKRMQQAP KYDESAMVNT VAQSDEDVID AKALATSSGS PQVGGSKRSV  120
IRLDNLIMDA INNLKEPGGS NKTTIAEYIE DQYWAPPNFK RLLSAKLKYL TATGKLVKTK  180
RKYRIAPTSA LSDRRRKPSL PLLEGRQETR QRFSPMIDHE DIDIITKSQI DLELAKMRSM  240
TPEEAAAVAA QAVADAEAAI ADAEEAAKEA EAAEADADAA QAFAEAAMKT LKGRSIPRMM  300
VRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179196KRKYRIAPTSALSDRRRK
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112655.11e-154telomere repeat-binding factor 1
RefseqXP_027162481.11e-154telomere repeat-binding factor 1
SwissprotQ8VWK41e-106TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A068TPK31e-152A0A068TPK3_COFCA; Uncharacterized protein
STRINGXP_009606142.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]