PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8255_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 819aa    MW: 91114.5 Da    PI: 8.1442
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8255_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08701749348
                                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                          +W+  E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
  cra_locus_8255_iso_7_len_2991_ver_3 701 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 749
                                          8****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.092694753IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-13696754IPR009057Homeodomain-like
SMARTSM007171.1E-8698751IPR001005SANT/Myb domain
CDDcd116602.02E-18700750No hitNo description
SuperFamilySSF466891.48E-15700757IPR009057Homeodomain-like
PfamPF002491.7E-6701749IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
METVVGVEGN DEAKADNLAS DAVSDLTFLN PVSDPVVYKL VRVDGDGRLV PATDDEVMVV  60
EDLLKDDKSE VHFAAKNQSI DTTKRSLPET AHSNCSGGQP GNLDVGATIL NIHGDPSMER  120
REAKRIRKPT KRYIEETSDV GSRESNGRLV SLVELGKRIA HQEESTRSEG MNTSQSQNLE  180
ACSSSQGRSI GIDASTSGGS ITKPDFSMLK GEICLDNLSI KDLQETFKAT FGRETSVKDK  240
QWLKRRIAMG LTNSCDFSTT TFIIEDNRVV KMFKGETSKS SAASEDLIAE AGNQTSGGLT  300
DVCDKEINVH SDSDAKRPES SLLECNSVGE DPNVEQRVAK RVRKPTKRYI EEISEGESRE  360
SSGRMITLVR SPESGQQSAK SVVRPFHHSQ QEGRPTVTRQ DSFGGSGVQV PFVSRVRRSR  420
PRENFMTLAV LFSRIISSFT AHLGVQDGYA LFFLLVNNVI YVATAXFVLH LKMFDLFKFR  480
QKYDVSIPIC PSEMSYIICM KLCFRISLSL RCGLVWRQSI NLINCLVNQL HLIVLVLLFN  540
XTAFKKTRGE KGLWCLVLFR QMTANEIVXA ILNFTCXRCI VELYLFIDVP NCFEVAMCXK  600
LQLDDIGTSA KVVKKAFEEP ARMAHDDAGN NVLKASLSPK WIGQPLIAVS EEGKHHPERI  660
VEHENDIELK SMNSFGYKSD DSNVVNMPAP MGGMRRKHHR PWSLTEVVKL VEGVARYGAG  720
RWSEIKRLAF ASYSYRTSVD LKDKWRNLLR ASLTQLPAEN GMQNSRKHAS IPIPAPILLR  780
VRELAETQAQ VPPNISSSKF AGHSGGTDRN SQETRPGYL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167787.11e-105uncharacterized protein LOC113767790 isoform X1
RefseqXP_027167788.11e-105uncharacterized protein LOC113767790 isoform X2
TrEMBLA0A2R6PW017e-97A0A2R6PW01_ACTCH; Telomere repeat-binding protein
STRINGVIT_09s0002g01480.t015e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023