PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7417_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 587aa MW: 64594.6 Da PI: 4.2729

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7417_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2e-08	272	320	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE++++ ++v+ + W+ a +++ Rt ++++s+++++ cra_locus_7417_iso_1_len_2139_ver_3 272 EKWSEEEELIFHEVVANSPATlgknFWDYLATEFP-SRTKNEIVSYYFNV 320 58***********8755555555******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.36E-6	269	321	IPR009057	Homeodomain-like
SMART	SM00717	0.0019	270	323	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-7	272	320	IPR001005	SANT/Myb domain
CDD	cd00167	2.05E-7	273	321	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.2E-6	273	319	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.295	273	321	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MVQKRPHGEE LYEISSKQPR RLESSDEVVS SLEFPDENVA SNPHALGEFG QFPSKSKPEY 60 DEMLNGGNGA ELRTFLEKEI EASVPASFSN SSWATSKTSE EDIRLEPPFH LVLSPDHQNI 120 VHPTRTIIHV GDLYSSLLEY PPLKPVPVGK DYQAEIPEWG SLGAEQNSIC SEEISEAPNL 180 PSQSSKSDIS GNSDDDSRLA GTCIIPMPDL DISEDNVEKI GAGRINCSCG DEGSIRCVQQ 240 HITEAREKLR AALGEETFVK LGFSDMGEVV SEKWSEEEEL IFHEVVANSP ATLGKNFWDY 300 LATEFPSRTK NEIVSYYFNV FMLKKRALQN RCDPLNIDSD NDEWEETEYS AEYVIDTGKE 360 GYSPGVRSPG YEDAFGHDEF HENVHKSSED GYAKISGNDE YKHLSDNKVI VSENFCVPAF 420 DNHNTVAAFL QSDKFNEDAH EPSKAGAPET AGQGANQNFC ENKVTSNAAE HFSAEGSDNH 480 CSVPTLQPSV GFLLNEPAGQ DVQGGVCAPD NAGMAPEVSS EKADARRHWT GSPRGKGQAF 540 LLEPCSSCKE WEGGYLTRPK NEDFLSTCSM IEEVFGNGSL NDKNSDG

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MVQKRPHGEE LYEISSKQPR RLESSDEVVS SLEFPDENVA SNPHALGEFG QFPSKSKPEY  60
DEMLNGGNGA ELRTFLEKEI EASVPASFSN SSWATSKTSE EDIRLEPPFH LVLSPDHQNI  120
VHPTRTIIHV GDLYSSLLEY PPLKPVPVGK DYQAEIPEWG SLGAEQNSIC SEEISEAPNL  180
PSQSSKSDIS GNSDDDSRLA GTCIIPMPDL DISEDNVEKI GAGRINCSCG DEGSIRCVQQ  240
HITEAREKLR AALGEETFVK LGFSDMGEVV SEKWSEEEEL IFHEVVANSP ATLGKNFWDY  300
LATEFPSRTK NEIVSYYFNV FMLKKRALQN RCDPLNIDSD NDEWEETEYS AEYVIDTGKE  360
GYSPGVRSPG YEDAFGHDEF HENVHKSSED GYAKISGNDE YKHLSDNKVI VSENFCVPAF  420
DNHNTVAAFL QSDKFNEDAH EPSKAGAPET AGQGANQNFC ENKVTSNAAE HFSAEGSDNH  480
CSVPTLQPSV GFLLNEPAGQ DVQGGVCAPD NAGMAPEVSS EKADARRHWT GSPRGKGQAF  540
LLEPCSSCKE WEGGYLTRPK NEDFLSTCSM IEEVFGNGSL NDKNSDG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25