PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7243_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 839aa    MW: 91981 Da    PI: 6.171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7243_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85e-106390127
                                         --S---SGGGGTS.--TTTTT-SS-SSS CS
                              zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                                         +kt+lC++f+r+   C++G++C+FaHg+
  cra_locus_7243_iso_5_len_2818_ver_3 63 WKTSLCSYFRRSNgLCSHGETCRFAHGE 90
                                         8**********999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-135994IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-76095IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-56290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7186291IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-76390IPR000571Zinc finger, CCCH-type
CDDcd005907.19E-5156221No hitNo description
Gene3DG3DSA:3.30.70.3301.2E-6159222IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.72E-6159227IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000761.6E-4159220IPR000504RNA recognition motif domain
PROSITE profilePS5168745.286290839IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.02E-50292318IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.02E-50350453IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.02E-50522644IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.5E-63542644IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138471.6E-9588646IPR025714Methyltransferase domain
CDDcd024408.96E-7590644No hitNo description
PfamPF059582.0E-7721773IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:3.40.50.1501.5E-63722777IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.02E-50725778IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300733765IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.5E-63814839IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.02E-50823839IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MSAAPSTAAL KPSMDGHDSV NLPESSELTS PPTAEIASTG EKRKREDDPE PTPAPEQKQH  60
PLWKTSLCSY FRRSNGLCSH GETCRFAHGE SELRIRPDNT WDPTSERSKK IARKEEELSE  120
SVKEQETGGD GVMMTEVFAE GENGGSSAAE AELTKCLVNL PMRWTSDNLR SFLREHGIKF  180
KSAKKKKGMM VGFLSFENAT QLKSASEELE GKSVGNKTLK VADVIPRAFE KKDRVALPAA  240
QATEQAGKTA SVSENADVHE SLNISEDGEP MDDNSVPKSA DLNSRRVRDV VTPLAHMTYP  300
DQLEHKKTSL MQTLKRLTRN ARKACPTGVP LPEWVHKSRE IGGLPCKLEG IIESPLVNGY  360
RNKCEFSVGY SLQGKPTVGF LLGNFREGVT AVEEPMDCPN VSRISCRYAA IFQEFLQNSS  420
FPIWNRLNNT GFWRQLTVRE GRRPGKSTEV ENSELTVSEV MLMVQVCTVG LDDKLVNDEL  480
QRLAQAFAAG ASAESPSLPL TALVIQDHTG ISNAAPADAP LRSLPIPKED RNMELVDSCD  540
IEGRIHDCIS NLRFSISPTA FFQVNTLAAE KLYALAGDWA GLGPDTLLFD ICCGTGTIGL  600
TLAHRVGMVV GIEMNASAVS DAERNAKING VKNCRFICAK AEDVMGSLLK EYLTLSAKHQ  660
ESSEVEKDEK DIKISEVKLD SAKDAVEPDE SSGQQEFRSL ENGSAGTESQ LCSTSESSTA  720
SLQQFKNIVA IVDPPRVGLH PTVTKALRTH PTLRRLVYIS CNPDTLVANA IELCTPSTDK  780
TEQGRQKNNR GWRNMSSAGL ARHRTKSMPN SEPFKPIKAM AVDLFPHTPH CELVMLLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A2e-1827865167371Uncharacterized RNA methyltransferase SP_1029
5xj2_A2e-1827865167371Uncharacterized RNA methyltransferase SP_1029
5xj2_B2e-1827865167371Uncharacterized RNA methyltransferase SP_1029
5xj2_C2e-1827865167371Uncharacterized RNA methyltransferase SP_1029
5xj2_D2e-1827865167371Uncharacterized RNA methyltransferase SP_1029
5zq0_A2e-1827865168372Uncharacterized RNA methyltransferase SP_1029
5zq1_A2e-1827865167371Uncharacterized RNA methyltransferase SP_1029
5zq8_A2e-1827865167371Uncharacterized RNA methyltransferase SP_1029
5zq8_B2e-1827865167371Uncharacterized RNA methyltransferase SP_1029
5zth_A2e-1827865168372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177251.10.0zinc finger CCCH domain-containing protein 24 isoform X1
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2R6P7M10.0A0A2R6P7M1_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_06s0004g02940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA807488
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]