PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6982_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 607aa MW: 70049.7 Da PI: 8.7332 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.5e-12 | 107 | 147 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G+g+W+ + +++g +++ ++c+++++ cra_locus_6982_iso_3_len_2141_ver_3 107 WKADEEILLLEGIEMYGMGNWAEVGEHVG-TKSKESCIEHYR 147 *****************************.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50135 | 10.981 | 43 | 90 | IPR000433 | Zinc finger, ZZ-type |
SMART | SM00291 | 3.4E-10 | 43 | 88 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 2.7E-10 | 46 | 88 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 1.30E-24 | 47 | 95 | No hit | No description |
SuperFamily | SSF57850 | 2.35E-14 | 47 | 110 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 49 | 76 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 4.06E-11 | 99 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 20.903 | 102 | 154 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-10 | 103 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-11 | 106 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.52E-10 | 107 | 147 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-7 | 107 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50934 | 8.555 | 521 | 607 | IPR007526 | SWIRM domain |
SuperFamily | SSF46689 | 4.3E-10 | 544 | 605 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MGRSRGNFQA EEDPSQRSRR RKNASNGENI ESVGAGQGTT EGKRALYHCN YCNKDISGRM 60 RIKCAVCSDF DLCIECFSVG AEVHPHKSNH PYRVMDVLSF PLICPDWKAD EEILLLEGIE 120 MYGMGNWAEV GEHVGTKSKE SCIEHYRSAY LNSPYFPLPD MTHVIGKNRK ELLAMAKGHT 180 EDKKGLSSHG EFAPKEESPF SPSRVKVEDS HKSSPSGRLP SGAPVAGKIA KKKASKNVQV 240 KDQPDSVKPD GRNVDSNKSE SSKLEGSSLM DLSGYNLKRQ EFDPEYDNDA ENLLADMEFK 300 ETDTEEEQEI KLRVLRLYSK RLDERKRRKD FILDRNLLHQ NAFEKDLSQE EKALCRNYDP 360 FMRFLSKEEY EEFIKSVVAE HRILKRIQEL RKHKLLVVIQ QLKPIDTWNV KERVKLKKMD 420 LERKVVKMVE IAVTFLMCLF LQIQSIHIPT IGXRPRQISA LLLIQIVWNA LRWNYCLHRY 480 AYPVSVLNHI IQHFAIAFSM RDQYSSYCIF RYMIIELAKI THSNLXFVLI ILHELSYLKS 540 GXXQEKRLCR EIGLSPPEYL KMQEVMTTQI FSGQITKKSD AYPLFQIEPA KIDKVFDILA 600 RKGIVPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 4e-40 | 47 | 162 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 4e-40 | 47 | 162 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 329 | RKRRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known (By similarity). ADA2 stimulates the acetyltransferase activity of GCN5 on free histones or nucleosomes, probably by opening up the promoter region. Mediates auxin and cytokinin signals in the control of cell proliferation and might be involved in repression of a freezing tolerance pathway at warm temperature (PubMed:12615937, PubMed:12747832). Involved in the positive regulation of salt-induced gene expression by maintaining locus-specific acetylation of histones H4 and H3 (PubMed:21193996). {ECO:0000250, ECO:0000269|PubMed:12615937, ECO:0000269|PubMed:12747832, ECO:0000269|PubMed:21193996}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027088380.1 | 0.0 | LOW QUALITY PROTEIN: transcriptional adapter ADA2b-like | ||||
Swissprot | Q9ATB4 | 1e-162 | TAD2B_ARATH; Transcriptional adapter ADA2b | ||||
TrEMBL | A0A068U7L7 | 0.0 | A0A068U7L7_COFCA; Transcriptional adapter | ||||
STRING | VIT_00s0194g00130.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2447 | 12 | 15 |