PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6819_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 384aa MW: 43435.3 Da PI: 4.4715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6819_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.7	3.5e-14	150	234	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtse 74 W+++e+ L++a ++ + +r++l+ W+ev++k+ re ++ r+ qC+++++ l+k+ykk+k+ + cra_locus_6819_iso_2_len_2477_ver_3 150 WSEHETFILLDAWGDKFLQHGRKSLRSEEWQEVAEKVsRESKIDRTDSQCRNRLDTLKKKYKKEKAKFLDS-GS 222 ***********************************99999*******************998874.67 PP trihelix 75 ssstcpyfdqle 86 s+++yf++++ cra_locus_6819_iso_2_len_2477_ver_3 223 FISKWVYFKKMD 234 888******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.2E-23	149	236	No hit	No description
PROSITE profile	PS50090	6.237	150	207	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.1E-4	165	214	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDTEDDARYP PIPYGVNQPY SSSSRQKVPS RNTSAFARNG NNHYAEDNDV DDEDEDVDDE 60 EDDEHEENGV QRLGKDEYED DDLEDEDDDD DEYGDTQRHP KKRKLKSLLS SYEFAPRVPA 120 PAPAPAPAPT PAPGAAPKPT FGGRNSVADW SEHETFILLD AWGDKFLQHG RKSLRSEEWQ 180 EVAEKVSRES KIDRTDSQCR NRLDTLKKKY KKEKAKFLDS GSFISKWVYF KKMDSLMSSP 240 PQQAGLSCGV DSGEYVFMNP GDYLNRSNGL DEMRDSPGNS ESAEGEEDSE GLPPKRTKNG 300 KGRGGNGTSF KLLADSIQKF SDIYEKIENS KRQQMLELEK MRMDFHRDLE LQKRQILERA 360 QAEIAKIRQG DDEENDVSAG NISG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDTEDDARYP PIPYGVNQPY SSSSRQKVPS RNTSAFARNG NNHYAEDNDV DDEDEDVDDE  60
EDDEHEENGV QRLGKDEYED DDLEDEDDDD DEYGDTQRHP KKRKLKSLLS SYEFAPRVPA  120
PAPAPAPAPT PAPGAAPKPT FGGRNSVADW SEHETFILLD AWGDKFLQHG RKSLRSEEWQ  180
EVAEKVSRES KIDRTDSQCR NRLDTLKKKY KKEKAKFLDS GSFISKWVYF KKMDSLMSSP  240
PQQAGLSCGV DSGEYVFMNP GDYLNRSNGL DEMRDSPGNS ESAEGEEDSE GLPPKRTKNG  300
KGRGGNGTSF KLLADSIQKF SDIYEKIENS KRQQMLELEK MRMDFHRDLE LQKRQILERA  360
QAEIAKIRQG DDEENDVSAG NISG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027168081.1	1e-178	trihelix transcription factor ASIL2-like
TrEMBL	A0A068TP07	1e-176	A0A068TP07_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400080593	1e-167	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31