PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6793_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CO-like
Protein Properties Length: 411aa    MW: 44969.3 Da    PI: 5.8009
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6793_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.51e-061758439
                             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                         r C+++ +   + +C+ ++ +lC  C + +H        H++
  cra_locus_6793_iso_2_len_1756_ver_3 17 RACDTCRSAACTVYCKADSAYLCSGCDSRIHAAnkvasrHER 58
                                         67******99*********************65666666765 PP
2zf-B_box31.14.7e-1058104242
                             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                          + ++C+ +e+ ++ + C+ +   lC++C + +H+       H +vp+
  cra_locus_6793_iso_2_len_1756_ver_3  58 RVWICESCEKAPAAFLCKADAASLCATCDSDIHSAnplarrHHRVPI 104
                                          5689*****************************66899999877775 PP
3CCT67.92.7e-23342385144
                                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                          Rea++lRY+eK++tRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  cra_locus_6793_iso_2_len_1756_ver_3 342 REARVLRYREKKRTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 385
                                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.211461IPR000315B-box-type zinc finger
SMARTSM003362.0E-81461IPR000315B-box-type zinc finger
CDDcd000211.77E-71761No hitNo description
PROSITE profilePS5011911.23457104IPR000315B-box-type zinc finger
PfamPF006432.9E-758104IPR000315B-box-type zinc finger
CDDcd000212.76E-960104No hitNo description
SMARTSM003363.6E-1062104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.599342384IPR010402CCT domain
PfamPF062033.5E-17342384IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
GDLYTGGGGV RSNNWARACD TCRSAACTVY CKADSAYLCS GCDSRIHAAN KVASRHERVW  60
ICESCEKAPA AFLCKADAAS LCATCDSDIH SANPLARRHH RVPILPIPLT TGCLYGGGGG  120
GGPMIGHTAT ADEVEDDFNL TPVAAGEGGD DTTIDEDDEN EAASWLLLNP VKNYSSSNEH  180
NNGQGNNNNN IGGIFGGEGV DEYLDLVDYQ QEDNNQFGDH EYVVSDEKNR YGVGAAECVV  240
PSSRNGDGKX XXXXHHHHHL HQFQNHQSFQ LGLDYEISNN TGYGYPASIT HTVSVSSMEV  300
GVVPDSMMSD VSFSHPRPPK GTIDLFSSAP LQMPQQLTPM DREARVLRYR EKKRTRKFEK  360
TIRYASRKAY AETRPRIKGR FAKRTEAEIE VDQMLSTTSI TENGYSIVPS F
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759198.11e-161zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-126COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLC0Z3T81e-163C0Z3T8_SOLTU; CONSTANS protein
STRINGPGSC0003DMT4000260651e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]