PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6475_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 305aa    MW: 34728.3 Da    PI: 6.7029
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6475_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-15169269299
                                          EEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHH CS
                                   B3   2 fkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvka 71 
                                          +  l+ sd+  + +rl+lpk++ae++  +++++++  ++++d++g+ Wev+++y  ++++++++ +G +e   +
  cra_locus_6475_iso_3_len_1326_ver_3 169 EILLSASDADHNlSRLILPKRCAEAFfpDISEPRGLPIMIRDTEGKDWEVNYRYwINSGCKMYIVEGLRELMIS 242
                                          55677777776679**************888889999****************94455556999********** PP

                                          HT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  72 ngLkegDfvvFkldgrsefelvvkvfrk 99 
                                          ++ ++gD+v+F  ++  +++lv++++++
  cra_locus_6475_iso_3_len_1326_ver_3 243 KRWQAGDTVTFFKVE-PGGKLVIGLRKA 269
                                          ***********9443.999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-17165268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-22165270IPR015300DNA-binding pseudobarrel domain
CDDcd100176.36E-19166268No hitNo description
SMARTSM010191.7E-15168270IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56169270IPR003340B3 DNA binding domain
PfamPF023627.9E-12172269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASSSRIACF QCEESSSNFD HFKNGWRLRS GEFAQLCHRC SYDSFSSHCR LIFVLFMRRE  60
GSVRLSIQMM MGGEIVNLVE SWSIVDVLSH LMHICSWILA ELSAWSAQEX NFKLARHRCL  120
ALESQLLFGS HQDMIRQNMI ELPNWPRVTE AELQKISRPS DSVVTPLFEI LLSASDADHN  180
LSRLILPKRC AEAFFPDISE PRGLPIMIRD TEGKDWEVNY RYWINSGCKM YIVEGLRELM  240
ISKRWQAGDT VTFFKVEPGG KLVIGLRKAS GYQPPNENSS XSIQTENQDG AVGNILSNSM  300
QLTSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-381462702125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061772.13e-95B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBLA0A068UBK41e-89A0A068UBK4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1299499