PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6467_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 806aa    MW: 90847.4 Da    PI: 6.6182
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6467_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22123223198
                                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                                          f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ 
  cra_locus_6467_iso_2_len_3172_ver_3 123 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSV 194
                                          99****************************964333..4459******************************** PP

                                          HHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                   B3  68 FvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                          Fv+a++L +gD ++F   + +++el+v+v+r
  cra_locus_6467_iso_2_len_3172_ver_3 195 FVSAKKLVAGDAFIFL--RGENGELRVGVRR 223
                                          ****************..449999*****97 PP
2Auxin_resp109.53.6e-36249332183
                           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldp.vr 73 
                                          a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm fe+e+++err+sGt+vgv + +p +r
  cra_locus_6467_iso_2_len_3172_ver_3 249 ASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMTFEGEEVPERRFSGTIVGVGADNPsSR 322
                                          789***************************************************************87665279 PP

                           Auxin_resp  74 WpnSkWrsLk 83 
                                          Wp+S+WrsLk
  cra_locus_6467_iso_2_len_3172_ver_3 323 WPDSEWRSLK 332
                                          ********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-43113252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-40120238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-20121223No hitNo description
PROSITE profilePS5086311.265123225IPR003340B3 DNA binding domain
PfamPF023621.5E-20123223IPR003340B3 DNA binding domain
SMARTSM010196.8E-21123225IPR003340B3 DNA binding domain
PfamPF065074.0E-34249332IPR010525Auxin response factor
PfamPF023095.7E-8536608IPR033389AUX/IAA domain
PROSITE profilePS5174523.7539624IPR000270PB1 domain
SuperFamilySSF542774.9E-10540610No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MNANQFAVAP PGPSNDALYK ELWHACAGPL VNVPREGERV YYFPQGHMEQ LEASTHQGLD  60
QQLPSFNLPA KILCKVMNIQ LRAEPETDEV YAQITLLPDP DQGEITSPDP PLPEPQRCTV  120
HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVASDLHG NEWHFRHIFR  180
GQPRRHLLTT GWSVFVSAKK LVAGDAFIFL RGENGELRVG VRRLMRQLNN MPSSVISSHS  240
MHLGVLATAS HAISTGTLFS VFYKPRTSRS EFIVSVNKYL EAQSHKLSVG MRFKMTFEGE  300
EVPERRFSGT IVGVGADNPS SRWPDSEWRS LKVQWDEPSS ILRPDRVSPW EIEPLVAASP  360
PNTQPPQRNK RARPTVLPSP VPDISTLGIW KSQVESPYSD PSRGHEFYPS PKLSAVTKAN  420
TLNYGENNSL PPVSNKSMFW SNQAATVTES AAPVAEKRQA NGYRLFGIEL VDHSTVEETS  480
PAILSGAVTE DQVVISRDSE SDQQSEPSRP NRSDIPSVSC EPEKSCLRSP HESHGRQIRS  540
CTKVHMQGIA VGRAVDLTRF DGYEDLLKKL EEMFEIDGEL SGSSKKWQVV YTDDEDDMMM  600
VGDDPWQLSL NNLFFDLRLS CLLSFYMFRF FKFTLHNCAF GYFHFRIICR TKAIGPTAII  660
ELFDSLILKY LEVLSWDCSF KIRKSLRMNW QKEFNDIXTM MVHSQFYQLQ VLTVSPYLVL  720
SSEFCSMVRK IYIYTSEEAK RLSPKTKLPV GEVKSGKPVS DAAGIGTEEQ SSTVGSGYXY  780
SHLYSQRKDN NVAEEIVRGM EGRYMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033594359Auxin response factor 1
4ldw_A0.033594359Auxin response factor 1
4ldw_B0.033594359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027159038.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A3Q7EPY40.0A0A3Q7EPY4_SOLLC; Auxin response factor
TrEMBLD9I2J00.0D9I2J0_SOLLC; Auxin response factor
STRINGSolyc01g103050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]