PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6393_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 29308.1 Da PI: 9.6311 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 99 | 121 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H cra_locus_6393_iso_8_len_1277_ver_3 99 SCSVCSRVYPTSRLLSIHVSEvH 121 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.26 | 71 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.1 | 98 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 100 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.42 | 136 | 161 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 161 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
XPSMAMEVEV NTESLGFPYW RPIRRRLPPG SPFFRSGDIE RELLVKQVAL DLTEEEKQQI 60 RHMEDQESSK IFCPIVGCGA HLKSLDAFED HYMARHSASC SVCSRVYPTS RLLSIHVSEV 120 HDSFFQAKVA RGFPMYECLV EGCGVKLKNY KSRQQHLVDK HKFPTSFEFF KKAPPSKKQR 180 QKNQQKKSLA NTEEVSRTMQ IDRDATNDLV SAISKLSTSD TPSSISFGRR NTRGLTFVPR 240 AVQRDRRPDS SDEMKT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 182 | KKQRQKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270554.1 | 1e-133 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | A0A2R6RJX9 | 1e-132 | A0A2R6RJX9_ACTCH; Zinc finger protein | ||||
STRING | VIT_14s0068g01930.t01 | 1e-132 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10211 | 20 | 22 |