PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_61901_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 122aa MW: 13784.3 Da PI: 10.6886 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.1 | 7.7e-32 | 2 | 72 | 57 | 128 |
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk++++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl cra_locus_61901_iso_1_len_363_ver_3 2 EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKAITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 72 8*************************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.994 | 1 | 95 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-40 | 2 | 96 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-15 | 3 | 72 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
XEWYFFSPRD RKYPNGSRPN RVAGSGYWKA TGTDKAITTE GRKVGIKKAL VFYIGKAPKG 60 TKTNWIMHEY RLSEPSRKIG SSRLDDWVLC RIYKKNSSAQ KSNISDLQNK EISHGSSSSS 120 SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-64 | 2 | 101 | 75 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-64 | 2 | 101 | 75 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-64 | 2 | 101 | 75 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-64 | 2 | 101 | 75 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-64 | 2 | 101 | 75 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-64 | 2 | 101 | 75 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-64 | 2 | 101 | 75 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-64 | 2 | 101 | 75 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306107.1 | 3e-71 | JA2-like | ||||
Swissprot | A0A3Q7HH64 | 2e-72 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | M1BP49 | 1e-68 | M1BP49_SOLTU; Uncharacterized protein | ||||
STRING | Solyc07g063410.2.1 | 1e-70 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Publications ? help Back to Top | |||
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