PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5582_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YB | ||||||||
Protein Properties | Length: 244aa MW: 27844.3 Da PI: 5.8231 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.5 | 5.3e-55 | 99 | 194 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lG cra_locus_5582_iso_1_len_1029_ver_3 99 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGSLG 172 89************************************************************************ PP NF-YB 76 fedyveplkvylkkyrelegek 97 f+dy+eplk+yl+kyrelege+ cra_locus_5582_iso_1_len_1029_ver_3 173 FDDYAEPLKIYLHKYRELEGER 194 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-54 | 97 | 217 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.17E-41 | 101 | 204 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-27 | 104 | 168 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.2E-19 | 132 | 150 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 135 | 151 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.2E-19 | 151 | 169 | No hit | No description |
PRINTS | PR00615 | 1.2E-19 | 170 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
CNSNDWRXXS SKFRWEWRII QQNLLLDLTK CFLRAQIGDS SSLICDQWCP GYMIAGDXLF 60 DWAGDTTTRS XHESVYILGA LKFNYEGAAT GTGDDGIIKE QDRLLPIANV GRIMKQILPP 120 NAKISKEAKE TMQECVSEFI SFVTGEASDK CHKEKRKTVN GDDICWALGS LGFDDYAEPL 180 KIYLHKYREL EGERSNQNNK TAGNMTIEER DEQSNCRSEP VRRQTVSPTI TNFNVTDAKY 240 SRRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 5e-45 | 98 | 189 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 5e-45 | 98 | 189 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652046.1 | 2e-81 | PREDICTED: nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | F6HPZ6 | 5e-80 | F6HPZ6_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0104g01640.t01 | 8e-81 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |