PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_54367_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 95aa MW: 11152.7 Da PI: 5.8533

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_54367_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	92.1	6.4e-29	19	94	2	86
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskek 77 Fl k+y ++ed+ ++e++sw+ +g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ cra_locus_54367_iso_1_len_336_ver_3 19 FLLKTYMLVEDPVTDEVMSWNGEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR-------- 86 9****************************************************************998........ PP SEEEEESXX CS HSF_DNA-bind 78 iweFkhksF 86 weF+++ F cra_locus_54367_iso_1_len_336_ver_3 87 -WEFSNDMF 94 .99999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.2E-33	12	95	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.03E-28	15	95	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.9E-36	15	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.1E-26	19	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	58	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MECEKGFAEY VRKASPPPFL LKTYMLVEDP VTDEVMSWNG EGTAFVVWQP AEFARDLLPT 60 LFKHSNFSSF VRQLNTYGFR KVATNRWEFS NDMFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-19	17	83	18	84	Heat shock factor protein 1
5hdg_A	2e-19	17	83	8	74	Heat shock factor protein 1
5hdn_A	2e-19	17	83	8	74	Heat shock factor protein 1
5hdn_B	2e-19	17	83	8	74	Heat shock factor protein 1
5hdn_C	2e-19	17	83	8	74	Heat shock factor protein 1
5hdn_D	2e-19	17	83	8	74	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023902084.1	1e-59	heat stress transcription factor B-3-like isoform X1
Refseq	XP_023902085.1	8e-60	heat stress transcription factor B-3-like isoform X2
Swissprot	O22230	1e-44	HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBL	A0A2N9IBC9	6e-58	A0A2N9IBC9_FAGSY; Uncharacterized protein
STRING	VIT_08s0007g08750.t01	1e-56	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113