PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4692_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 1145aa    MW: 127000 Da    PI: 6.9051
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4692_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-22166267199
                                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                                          f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W++++iyr++++r++lt+GW+ 
  cra_locus_4692_iso_4_len_3992_ver_3 166 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSL 237
                                          99*****************************96555444..8******************************** PP

                                          HHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  68 FvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                          Fv+ ++L +gD+v+F   ++++++l+++++r+
  cra_locus_4692_iso_4_len_3992_ver_3 238 FVSGKRLFAGDSVLFI--RDEKQQLLLGIRRA 267
                                          ****************..5688889****997 PP
2Auxin_resp119.13.6e-39292375183
                           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvr 73 
                                          aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvr
  cra_locus_4692_iso_4_len_3992_ver_3 292 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVR 365
                                          79******************************998669************************************ PP

                           Auxin_resp  74 WpnSkWrsLk 83 
                                          W+nS+Wr+L+
  cra_locus_4692_iso_4_len_3992_ver_3 366 WKNSQWRNLQ 375
                                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-43156295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-41157281IPR015300DNA-binding pseudobarrel domain
CDDcd100177.47E-19165257No hitNo description
PROSITE profilePS5086311.942166268IPR003340B3 DNA binding domain
PfamPF023622.1E-20166267IPR003340B3 DNA binding domain
SMARTSM010197.2E-23166268IPR003340B3 DNA binding domain
PfamPF065071.7E-34292375IPR010525Auxin response factor
PROSITE profilePS5174527.82110331117IPR000270PB1 domain
PfamPF023095.8E-710331118IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-610461111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1145 aa     Download sequence    Send to blast
XGRGFYQIMK LILQKHFLQL IYLRNFFVSI LHFLGHFDGE IKSIDKSDRL IFAGEKKSIN  60
PELWQACAGP LVNLPAAGTH VVYFPQGHSE QVAASMKKDV DAQIPNYPNL PSKLLCLLHN  120
VTLHADPETD EVYAQMTLQP VPSFDKDALL RSDLTMKANK PQTEFFCKTL TASDTSTHGG  180
FSVPRRAAEK IFPPLDFTMQ PPAQELVARD LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS  240
GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ PTNLSSSVLS SDSMHIGILA AAAHAAANNS  300
PFTVFYNPRA SPSEFVIPLA KYYKAVCSNQ ISLGMRFRMM FETEESGTRR YMGTITGISD  360
LDPVRWKNSQ WRNLQVGWDE STAGERRNRV SIWEIEPVTA PFFICPTPFF RPKRPRQPGM  420
PDDDSSDLDS IFKRTMPWLG DDFGMKDPQG LPGLSLVQWM NMQQSSSLAN SMQPNYLQSF  480
SGSVLQNLAG ADLSRQLGGL PGQVPQHNNL QFNGQRPGQQ PQHLEQLQKL PAASLNPLGS  540
IIQPQQQLTD LAQQQRQNLM NQTLPTSQVQ AQLLQANLVQ SQNVLQQQQA SHQLQRNLSQ  600
NLQSPQSQPQ QQNFESESTT KPNGSQSNDP ISQQFNMPEN QIQLQLLQKL HQQQQSFLAQ  660
QSALQQPPQL TPIHDQQKPL LDVPQSFSRS MTSSQILDAS QTISTSLPQS HVSPQQMTRT  720
GSQNNLRFNQ PPLQGKPHQQ QQQPGVLPEL HGHVGHTLTP TNQLSAAGSS LITGAAGGGH  780
SAITDDIPSC STSPSTNNCP NVVQPIMNGR THRSAPMGDE ITQPSATLLS SSGLETVSAS  840
SNLVKDMMQK PEVKPSLNVS KSQNQGFFAH QTFLNTSGAQ IDYLDSSSSA TSVCLSQNDV  900
HLQQNTNQMS FNSQPVLFRD TSQEDVHADP RTNISFGANM DNQLGMPMMS DPVITKGMMG  960
SGKDFSNNLA SEGGMLSSFE NPKESQPELS SSMVSGSFGV PDMAFNSIDS AINDNGFMNR  1020
NAWAPPPQLP RMRTYTKVYK RGAVGRSIDI TRYSGYEELK QDLARRFGIE GQLEDRQRIG  1080
WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ MSLDGDFGNS VLPNQACSSS  1140
DGGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1705539647388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068123.10.0auxin response factor 19-like isoform X1
TrEMBLA0A068UXX80.0A0A068UXX8_COFCA; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465