PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4280_iso_10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C3H | ||||||||
Protein Properties | Length: 308aa MW: 33956.8 Da PI: 7.9266 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.7e-11 | 16 | 42 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C++f +t Ck+G+rCkF+H++ cra_locus_4280_iso_10_len_2065_ver_3 16 PGVPDCPYFVKTQRCKFGSRCKFNHPK 42 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.9 | 3.5e-13 | 65 | 89 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG CkyG++CkF+H++ cra_locus_4280_iso_10_len_2065_ver_3 65 EPPCAFYMKTGKCKYGATCKFHHPK 89 79*********************96 PP | |||||||
3 | zf-CCCH | 39.1 | 1.2e-12 | 135 | 158 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ cra_locus_4280_iso_10_len_2065_ver_3 135 EVDCPFYLKTGSCKYGATCRYNHP 158 689********************9 PP | |||||||
4 | zf-CCCH | 36.1 | 1.1e-11 | 213 | 237 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+f+++tG Ck+G rC+F+H++ cra_locus_4280_iso_10_len_2065_ver_3 213 EIECDFYMKTGDCKFGQRCRFHHPF 237 568********************95 PP | |||||||
5 | zf-CCCH | 40.6 | 4.3e-13 | 267 | 288 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p cra_locus_4280_iso_10_len_2065_ver_3 267 CPYYMKTGTCKYGATCKFDHPP 288 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.028 | 15 | 43 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-6 | 15 | 42 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-9 | 17 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 20 | 46 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-6 | 21 | 44 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-6 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.929 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.24E-6 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 65 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-7 | 67 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-6 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-10 | 135 | 158 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 136 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 138 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 210 | 238 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 210 | 237 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 213 | 238 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-9 | 213 | 237 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 216 | 235 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.666 | 261 | 289 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 265 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-6 | 267 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 267 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MQVPMIANGE FLPERPGVPD CPYFVKTQRC KFGSRCKFNH PKDETSPLGS MESVHVVMLP 60 DRPSEPPCAF YMKTGKCKYG ATCKFHHPKD LQIPVTAQEN NSAEEAGVAD NETANSFFSP 120 AVMHNSKGLP VRLGEVDCPF YLKTGSCKYG ATCRYNHPDR NTINPPAASP AQHLKFGVVS 180 PAASILQSFD SRLTQAPLHF GLGTTIYPQR PGEIECDFYM KTGDCKFGQR CRFHHPFDRS 240 VLAQEAQMQS VKLTLAGLPR REGAVHCPYY MKTGTCKYGA TCKFDHPPPG EVMASSAVGE 300 DEKVAEPI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027119770.1 | 1e-152 | zinc finger CCCH domain-containing protein 37-like isoform X2 | ||||
Refseq | XP_027172469.1 | 1e-152 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Swissprot | Q941Q3 | 1e-124 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2R6PQD6 | 1e-154 | A0A2R6PQD6_ACTCH; Zinc finger CCCH domain-containing protein | ||||
STRING | XP_010260864.1 | 1e-147 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10640 | 21 | 25 |