PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_405_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | DBB | ||||||||
Protein Properties | Length: 275aa MW: 31014.2 Da PI: 7.1875 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.8 | 9.4e-08 | 23 | 53 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++lfC ++ lC +C ++ H cra_locus_405_iso_2_len_1491_ver_3 23 TICDVCESAAAILFCAADEAALCSSCDEKVH 53 68**************************998 PP | |||||||
2 | zf-B_box | 28.1 | 4.1e-09 | 72 | 111 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H cra_locus_405_iso_2_len_1491_ver_3 72 EVTRCDICESAPAFFYCEVDGSSLCLQCDMLVHVGgkrtH 111 6789**************************9996544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.769 | 20 | 67 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.1E-8 | 20 | 67 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.02E-6 | 23 | 53 | No hit | No description |
Pfam | PF00643 | 5.1E-6 | 23 | 54 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.2 | 71 | 116 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-10 | 71 | 116 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-7 | 72 | 111 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.18E-8 | 74 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MASAGLLKRX LEESSHRNTI MRTICDVCES AAAILFCAAD EAALCSSCDE KVHLCNKLAN 60 RHIRVGLAEP SEVTRCDICE SAPAFFYCEV DGSSLCLQCD MLVHVGGKRT HGRYLLLRQR 120 VEFPGDKTGR LDELGLQPST PGGPRRESNL TSKETQTQEN QSAHPVPMIE NNMDGEKEVN 180 GKLIDLNARP KRIHGQASNN QGWIFQMGII MDLLVWFQLP LLKETLRSDQ EEKPRKNSHW 240 NKSTMVMRLY SMQKEDNQVY VSFHVFGDKA ARYLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021285669.1 | 1e-103 | B-box zinc finger protein 18 isoform X2 | ||||
Refseq | XP_021285670.1 | 1e-103 | B-box zinc finger protein 18 isoform X3 | ||||
Swissprot | C0SVM5 | 9e-71 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A251JTQ9 | 8e-99 | A0A251JTQ9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016111m | 1e-98 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |