PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3952_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 750aa MW: 81886.4 Da PI: 7.2702

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3952_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.4	2.7e-30	72	156	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++ + cra_locus_3952_iso_2_len_2453_ver_3 72 RWPRQETLALLKIRSEMGVAFRDSSLKGPLWEEVSRKMAELGYQRSSKKCKEKFENVYKYHKRTKEGRASK--P 143 8******************************************************************95..7 PP trihelix 75 ssstcpyfdqlea 87 + +t+++f+qlea cra_locus_3952_iso_2_len_2453_ver_3 144 DGKTYRFFEQLEA 156 7789*****85 PP
2	trihelix	105.9	2.8e-33	492	577	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW+k ev+aLi++r++++ +++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e cra_locus_3952_iso_2_len_2453_ver_3 492 RWPKAEVQALINLRTNLDMKYQENGPKGPLWEEISAGMSKLGYSRSAKRCKEKWENINKYFKKVKESNKKR-PE 564 8*******************************************************************8.99 PP trihelix 75 ssstcpyfdqlea 87 +s+tcpyf+qlea cra_locus_3952_iso_2_len_2453_ver_3 565 DSKTCPYFHQLEA 577 *********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.1E-4	69	131	IPR001005	SANT/Myb domain
CDD	cd12203	3.27E-24	71	136	No hit	No description
Pfam	PF13837	1.2E-19	71	157	No hit	No description
PROSITE profile	PS50090	7.573	71	129	IPR017877	Myb-like domain
SMART	SM00717	6.1E-4	489	551	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-4	491	548	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.329	491	549	IPR017877	Myb-like domain
Pfam	PF13837	6.6E-23	491	578	No hit	No description
CDD	cd12203	1.62E-26	491	556	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MLGTSSSSLL ATDAAAAAAA AEGNDSGGGA SGGSGEVVGG GGGTIIPGGG GGGFSDEENK 60 GGGGGGGGGG NRWPRQETLA LLKIRSEMGV AFRDSSLKGP LWEEVSRKMA ELGYQRSSKK 120 CKEKFENVYK YHKRTKEGRA SKPDGKTYRF FEQLEALESN PNPSSSLHHH QLPPPPPPPR 180 QQQQQPPVMA AVPIQPPSAN NPPPPPSSHV NVTVSSPNPV SFSPSVVHNP IMSQLPLPST 240 TTNAAVATNN NNIQAAAASS SSSSSSXXXX HSHHQHPHPN LSTTSNLLSD STSSSSTSSD 300 EDIGRRHNKK KRKFKDFFER LMKDVIDKQE ELQRKFLETL EKRERDRMIR EEAWRVQEMA 360 RMNRELDLLA QERSMAAAKD SAIMQFLQKV TGQQNLQTPT PPSISVPNTN NNYNNNIPPT 420 PNPVSLPENH PSPQPISVSA PSLPVASVSP SPSMVATQIV PASSLALVSK SDNGPGGEKE 480 RENFMGSSSS SRWPKAEVQA LINLRTNLDM KYQENGPKGP LWEEISAGMS KLGYSRSAKR 540 CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLEALYK EKAKSDHHPH HHHVSSYVSG 600 YSTNPLKPEN NNPNMVPIMA RPEQQWPQEE DHESDNMDQI NDHDEDDVDD DDDEDEDGSG 660 SGGYEIVTNK TAAAAASSSV ATTTAAEXAK GKKKERERER VAKAKDQANG GQIFAGKMSE 720 GRELRDEWGQ KAAKQRQMWW WEVVMGGENI

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MLGTSSSSLL ATDAAAAAAA AEGNDSGGGA SGGSGEVVGG GGGTIIPGGG GGGFSDEENK  60
GGGGGGGGGG NRWPRQETLA LLKIRSEMGV AFRDSSLKGP LWEEVSRKMA ELGYQRSSKK  120
CKEKFENVYK YHKRTKEGRA SKPDGKTYRF FEQLEALESN PNPSSSLHHH QLPPPPPPPR  180
QQQQQPPVMA AVPIQPPSAN NPPPPPSSHV NVTVSSPNPV SFSPSVVHNP IMSQLPLPST  240
TTNAAVATNN NNIQAAAASS SSSSSSXXXX HSHHQHPHPN LSTTSNLLSD STSSSSTSSD  300
EDIGRRHNKK KRKFKDFFER LMKDVIDKQE ELQRKFLETL EKRERDRMIR EEAWRVQEMA  360
RMNRELDLLA QERSMAAAKD SAIMQFLQKV TGQQNLQTPT PPSISVPNTN NNYNNNIPPT  420
PNPVSLPENH PSPQPISVSA PSLPVASVSP SPSMVATQIV PASSLALVSK SDNGPGGEKE  480
RENFMGSSSS SRWPKAEVQA LINLRTNLDM KYQENGPKGP LWEEISAGMS KLGYSRSAKR  540
CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLEALYK EKAKSDHHPH HHHVSSYVSG  600
YSTNPLKPEN NNPNMVPIMA RPEQQWPQEE DHESDNMDQI NDHDEDDVDD DDDEDEDGSG  660
SGGYEIVTNK TAAAAASSSV ATTTAAEXAK GKKKERERER VAKAKDQANG GQIFAGKMSE  720
GRELRDEWGQ KAAKQRQMWW WEVVMGGENI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618661.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
TrEMBL	A0A1S3XDN4	0.0	A0A1S3XDN4_TOBAC; trihelix transcription factor GTL1-like
TrEMBL	A0A3Q7JB43	0.0	A0A3Q7JB43_SOLLC; Uncharacterized protein
STRING	XP_009618661.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59