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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3503_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 470aa MW: 51069.8 Da PI: 8.5473 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 197 | 256 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+ cra_locus_3503_iso_4_len_1751_ver_3 197 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApTCPVRKQVQRCAEDTSILITTYEGTHNHS 256 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.451 | 192 | 258 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-27 | 193 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-36 | 197 | 257 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-30 | 197 | 258 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 198 | 255 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MTVVREENVR LKMLLNKIEK DYKSLQMRFT HIFHPEPKTT IEEPDELVSL SLGIRTPIDH 60 QSAAKINKSD SSSISKSKVE DDDDEHLKLG LNYDSEEAAK LPADLNANQS PENSLTETKE 120 EELAGGETWP PGGNKVNLKT TRSLSGDDDL SQANVKRARV SVRARCETAT VSKIISSPAF 180 LLIIQMNMNX FFGMLXMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPTCP VRKQVQRCAE 240 DTSILITTYE GTHNHSLPVS ARAMASTTSA AASALLSGSS SNSQSATTTF HGLNLSDNSK 300 TRPFYLPNST SLPFPTITLD LTASTPTTTT TSDHFNVFSS RFPSTNLSFS PSQTNILPTV 360 WSNGNLNYGT VLPYNKTTVG HLYQPNLPKN LYQLQNSQQV LTETLTKAIT SDPSFRAVIA 420 AALSMVSGGS ASSGPAQASS TAESVGKHLK WDGQTKIVSS NPLTSNGKGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 197 | 258 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073481.1 | 1e-139 | probable WRKY transcription factor 72 | ||||
TrEMBL | A0A068U1Q5 | 1e-130 | A0A068U1Q5_COFCA; Uncharacterized protein | ||||
STRING | EOY03394 | 1e-121 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12805 | 19 | 21 |