PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_27388_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 26865.1 Da PI: 6.3072 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H cra_locus_27388_iso_1_len_1003_ver_3 85 YECKTCNRTFSSFQALGGHRASH 107 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14 | 0.00014 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H cra_locus_27388_iso_1_len_1003_ver_3 153 HECSICGSEFSSGQALGGHMRRH 175 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 8.3E-13 | 84 | 109 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.38E-9 | 84 | 107 | No hit | No description |
SMART | SM00355 | 0.063 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.72 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.38E-9 | 148 | 175 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.5E-4 | 151 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.02 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.91 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-11 | 153 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDSMILKSKR NKRLRPPSPP STAVPTSCSA SSSDRSDEDE DMAANCLILL AQGGCGGNSK 60 QLEQEEEDDE IKDMEKISSA KFFVYECKTC NRTFSSFQAL GGHRASHKKP KLPTTAAPPD 120 DHELEEEDGL GQFNILELPN FNKGNNKMSN KIHECSICGS EFSSGQALGG HMRRHRNIST 180 ITKSIESSEK LPPPSPPVRS IFPLDLNLPA PAEDDHGGRE MKFQFSANKQ RLVFSAPALV 240 DCHY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613500.1 | 6e-60 | PREDICTED: zinc finger protein ZAT5-like | ||||
Refseq | XP_021609938.1 | 3e-60 | zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 6e-49 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A068UEU9 | 5e-60 | A0A068UEU9_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_031586m | 2e-59 | (Manihot esculenta) | ||||
STRING | XP_009613500.1 | 2e-59 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 |
Publications ? help Back to Top | |||
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