PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_26008_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 259aa MW: 27480.5 Da PI: 9.3826

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_26008_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.1	1.5e-20	23	73	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ cra_locus_26008_iso_1_len_979_ver_3 23 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 73 69*****.******8...557***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.22E-22	23	81	IPR016177	DNA-binding domain
Pfam	PF00847	5.4E-14	23	72	IPR001471	AP2/ERF domain
CDD	cd00018	1.61E-18	23	80	No hit	No description
SMART	SM00380	1.6E-38	23	86	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-32	23	80	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.894	23	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-11	24	35	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-11	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAPRDKSAVG GGAGAASGVK EVHFRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA 60 RAYDAAAREF RGAKAKTNFP LPAEEGDMNR NTLNLPNPFA NQINTNNKIN FNHSSPSQSS 120 TVESSSRETI SPAVVVADSS PSLLDLNLGG GAVRFPYPNQ QHHQFRLAQL AAGGFPGGMR 180 PQMYYMDAIA AHGLMNLPGQ QRHANPERVK VAAVDFLSGS GGSGGGVQSD SDSSSVVLDL 240 NRGDVSLNLD LNLPPPASD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-21	20	87	2	70	ATERF1
3gcc_A	1e-21	20	87	2	70	ATERF1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022861038.1	3e-64	ethylene-responsive transcription factor 4-like
TrEMBL	A1E0X9	1e-56	A1E0X9_SOLTU; Ethylene response factor 3
STRING	Solyc10g009110.1.1	5e-57	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165