PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_25697_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 516aa MW: 57338.4 Da PI: 4.9737

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_25697_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.2	2.9e-13	32	122	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 ffkvl+ d+ + l lp kfa++ +++ +k+ ++ed+sg W+v+l + +++ + kGW+eF a cra_locus_25697_iso_1_len_1867_ver_3 32 FFKVLIGRDYQEA--LFLPPKFAKTVqDLV---DKETKVEDSSGTCWTVTL--SHYKDLLAFHKGWSEFSVAW 97 7888866666654..9*****9996555...5689**********..9999999********* PP T--TT-EEEEEE-SSSEE..EEEEE-S CS B3 73 gLkegDfvvFkldgrsefelvvkvfrk 99 gL+ gDf+ +++ s f vv+vf + cra_locus_25697_iso_1_len_1867_ver_3 98 GLQLGDFLAVNHIKGSHF--VVHVFGR 122 *********9988888..9999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.1E-18	25	125	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.04E-20	26	125	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.842	30	123	IPR003340	B3 DNA binding domain
CDD	cd10017	8.28E-17	31	120	No hit	No description
SMART	SM01019	5.9E-9	32	123	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.0E-10	32	122	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.007	449	513	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MVGNTGACEE CVRTCQLLHW SKKDIEPRVT RFFKVLIGRD YQEALFLPPK FAKTVQDLVD 60 KETKVEDSSG TCWTVTLSHY KDLLAFHKGW SEFSVAWGLQ LGDFLAVNHI KGSHFVVHVF 120 GRDGCEKLNT ATKHPPVRRA RSSQNVATES TPCQATCRDA KKRKSSETSV LIQQTKTNCT 180 PNSEVGIEKQ VCIYNEFDLV VDRETGYDQS DYRACIFDLS SFEMQQHICP DGNSGKRLDG 240 QEGSSDHAQA VVNFQVDGNL VDKNPTERVV LRKETTIDSN IVENNKDLGP MDNMSLEHVA 300 NDLPSAVPTE SPADNCTDVD DKSNVVILCQ TPNSSTGCLS QNPLSINRNL NEEFKMVEKE 360 KVEKTEQASA CVRERVLEPS TSGEGGSSFA SVETIKIVKT EPVDSLDLPS TIDPSFTCLA 420 VTNGSVCIEL PDPLPSVVYP RGRQGRASVI IEDPKGRDWG CVYHEQFGFN VIVAPWFKIN 480 EENAIQPGDV LKFTMVPNAS SLNKYKFDIV REQLDN

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MVGNTGACEE CVRTCQLLHW SKKDIEPRVT RFFKVLIGRD YQEALFLPPK FAKTVQDLVD  60
KETKVEDSSG TCWTVTLSHY KDLLAFHKGW SEFSVAWGLQ LGDFLAVNHI KGSHFVVHVF  120
GRDGCEKLNT ATKHPPVRRA RSSQNVATES TPCQATCRDA KKRKSSETSV LIQQTKTNCT  180
PNSEVGIEKQ VCIYNEFDLV VDRETGYDQS DYRACIFDLS SFEMQQHICP DGNSGKRLDG  240
QEGSSDHAQA VVNFQVDGNL VDKNPTERVV LRKETTIDSN IVENNKDLGP MDNMSLEHVA  300
NDLPSAVPTE SPADNCTDVD DKSNVVILCQ TPNSSTGCLS QNPLSINRNL NEEFKMVEKE  360
KVEKTEQASA CVRERVLEPS TSGEGGSSFA SVETIKIVKT EPVDSLDLPS TIDPSFTCLA  420
VTNGSVCIEL PDPLPSVVYP RGRQGRASVI IEDPKGRDWG CVYHEQFGFN VIVAPWFKIN  480
EENAIQPGDV LKFTMVPNAS SLNKYKFDIV REQLDN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2210	23	52