PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2495_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 493aa MW: 55026.3 Da PI: 5.6591

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2495_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.5	1.1e-33	22	112	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 Fl k+y++++d++++e++sws + +sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ cra_locus_2495_iso_1_len_1852_ver_3 22 FLLKTYDMVDDSKTDEIVSWSPSRKSFIVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER------ 89 9******************999*************************************999...... PP TTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 76 ekiweFkhksFkkgkkellekikrkk 101 weF+++ F k++k+ll++i r+k cra_locus_2495_iso_1_len_1852_ver_3 90 ---WEFANEDFVKDQKHLLKNIFRRK 112 ...*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.8E-37	16	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-34	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.4E-60	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-19	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.4E-30	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-19	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-19	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MDGGPVTAAT AAGGGGGGPA PFLLKTYDMV DDSKTDEIVS WSPSRKSFIV WNPPEFARLL 60 LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHLLKNIFR RKPIHSHSNP 120 QGTTIDTERA AFEEEIDKLS REKSVLEGNV MRFEQQQSAA KLQLEDLTQK ISGIEQRQES 180 LLTFLDKAVQ NSGFLGALIQ KIESMDVSAY NKKRRLPQVD HSQSVQENIL VDNHSSSKPE 240 FGTIFHQDFC NKLRLELSPA VSDINMLSRS TQSSNEGETS QRRISEGWPK DARKSGGTPF 300 TPETLELSDT GTSFSLKMDS SAPHKMGCTE SPNLHSLQTC LASNEECDGI ISCHLNLSLA 360 SSPLPVLKSQ HSAEMVQMAQ EIDKGLDTSS KDGIFFSRSK ADDNEADLTI PQKNRNLPDD 420 NVTLSSSQNN KQGPATGQNR VNDVFWEQFL TERPGCSDEE ASSSFRASPY EVQDRKLGQG 480 MNRNVKIAEH LTL

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MDGGPVTAAT AAGGGGGGPA PFLLKTYDMV DDSKTDEIVS WSPSRKSFIV WNPPEFARLL  60
LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHLLKNIFR RKPIHSHSNP  120
QGTTIDTERA AFEEEIDKLS REKSVLEGNV MRFEQQQSAA KLQLEDLTQK ISGIEQRQES  180
LLTFLDKAVQ NSGFLGALIQ KIESMDVSAY NKKRRLPQVD HSQSVQENIL VDNHSSSKPE  240
FGTIFHQDFC NKLRLELSPA VSDINMLSRS TQSSNEGETS QRRISEGWPK DARKSGGTPF  300
TPETLELSDT GTSFSLKMDS SAPHKMGCTE SPNLHSLQTC LASNEECDGI ISCHLNLSLA  360
SSPLPVLKSQ HSAEMVQMAQ EIDKGLDTSS KDGIFFSRSK ADDNEADLTI PQKNRNLPDD  420
NVTLSSSQNN KQGPATGQNR VNDVFWEQFL TERPGCSDEE ASSSFRASPY EVQDRKLGQG  480
MNRNVKIAEH LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-22	12	111	16	129	Heat shock factor protein 1
5d5v_B	3e-22	12	111	16	129	Heat shock factor protein 1
5d5v_D	3e-22	12	111	16	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027116888.1	0.0	heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-156	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A068URR6	0.0	A0A068URR6_COFCA; Uncharacterized protein
STRING	POPTR_0001s32810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]