PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_22701_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 228aa MW: 22942.3 Da PI: 7.6982 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 185 | 6e-58 | 19 | 114 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlG cra_locus_22701_iso_1_len_875_ver_3 19 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 92 89************************************************************************ PP NF-YB 76 fedyveplkvylkkyrelegek 97 fe+yveplk+yl+kyrelegek cra_locus_22701_iso_1_len_875_ver_3 93 FEEYVEPLKIYLAKYRELEGEK 114 ********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.4E-55 | 12 | 121 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.28E-41 | 21 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.5E-28 | 24 | 88 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.9E-21 | 52 | 70 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 55 | 71 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.9E-21 | 71 | 89 | No hit | No description |
PRINTS | PR00615 | 4.9E-21 | 90 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MADSDNESGG HNAGDSSTRE QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI 60 SFITGEASDK CQREKRKTIN GDDLLWAMTT LGFEEYVEPL KIYLAKYREL EGEKTSMGRP 120 PGGEKDGSGG GSAAGGGGSG GGVNSGGSSG IYSGVSGGVV YHPGGQMYGS GGGSYHHHHH 180 QMSLSGGGGG GGVVGKGIGG TGGGSSVVGI GSGGVAATVT ATATVRRR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 7e-50 | 19 | 109 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 7e-50 | 19 | 109 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622977.1 | 4e-84 | PREDICTED: nuclear transcription factor Y subunit B-3-like, partial | ||||
Refseq | XP_023770069.1 | 2e-83 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 2e-75 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2U1M8K8 | 1e-83 | A0A2U1M8K8_ARTAN; NF-Y protein | ||||
STRING | XP_009622977.1 | 1e-83 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Publications ? help Back to Top | |||
---|---|---|---|
|