PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_22369_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | RAV | ||||||||
Protein Properties | Length: 357aa MW: 40414.1 Da PI: 8.7946 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.5 | 8e-09 | 76 | 123 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s+ kGV +g W A+I+ + +r++lg+f ++ eAa a++ a kl+ cra_locus_22369_iso_2_len_1638_ver_3 76 SKLKGVVLQQ-NGHWGAQIYA------NhQRIWLGTFKSEVEAAMAYDSASIKLR 123 6889998777.8******999......44**********99*********99997 PP | |||||||
2 | B3 | 86.5 | 2.2e-27 | 194 | 294 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---........--SEEEEEETTS-EEEEEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke......esktltledesgrsWevkliyrk 54 f k+ltpsdv+k++rlv+pkkfa + + e +++l++ d++ rsW+++++y+k cra_locus_22369_iso_2_len_1638_ver_3 194 FHKELTPSDVGKLNRLVIPKKFAVMYfpripesgednnsE---EnaaagvDDTELVFFDRTMRSWKFRYCYWK 263 89**************************999998765541...14556667789******************* PP ETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 55 ksgryvltkGWkeFvkangLkegDfvvFkld 85 +s+++v+t+GW++Fvk++gL+++D+++F++ cra_locus_22369_iso_2_len_1638_ver_3 264 SSQSFVFTRGWNRFVKDKGLRAKDMIIFSFC 294 ****************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.56E-22 | 76 | 134 | No hit | No description |
Pfam | PF00847 | 2.8E-4 | 76 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-14 | 76 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.975 | 77 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-14 | 77 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-14 | 78 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-31 | 191 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.79E-23 | 192 | 293 | No hit | No description |
SuperFamily | SSF101936 | 1.09E-26 | 193 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.858 | 194 | 312 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-24 | 194 | 294 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-21 | 194 | 302 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MASSISSARY QLLLFPVGKT RTNHSSNLPA RLSMEEQSEI SMAATNFTKE MSDSSSSSYL 60 IQNSKRPKMD PNSSSSKLKG VVLQQNGHWG AQIYANHQRI WLGTFKSEVE AAMAYDSASI 120 KLRSGDSHRN FPWTNITIEE PNFQSRFSTE IVLNMIKDGS YSSKFLDYLR ADSKTGQDLV 180 TSTQNGTLFC KKLFHKELTP SDVGKLNRLV IPKKFAVMYF PRIPESGEDN NSEENAAAGV 240 DDTELVFFDR TMRSWKFRYC YWKSSQSFVF TRGWNRFVKD KGLRAKDMII FSFCECKGGG 300 NNEQMQSLFM IDVGYYEGVV HGGGLVQNEN TAFVEENDSQ ETESNGSRKK GFRLFGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-25 | 190 | 305 | 10 | 110 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027067685.1 | 1e-143 | AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 1e-102 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A068V502 | 1e-142 | A0A068V502_COFCA; Uncharacterized protein | ||||
STRING | VIT_11s0037g00010.t01 | 1e-120 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |