PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21919_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CPP
Protein Properties Length: 602aa    MW: 64884.6 Da    PI: 8.0973
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21919_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.7e-15126165242
                                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                           ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  cra_locus_21919_iso_4_len_1972_ver_3 126 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCVNCHNNVEN 165
                                           89**************************.********9875 PP
2TCR512.9e-16210249140
                                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                           k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  cra_locus_21919_iso_4_len_1972_ver_3 210 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCLDCKNYE 249
                                           589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-17125165IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.818126250IPR005172CRC domain
PfamPF036381.1E-11127162IPR005172CRC domain
SMARTSM011146.6E-20210251IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12213248IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
XPAATDFPAK KLARQLDFTG YTGASSSASL TASLPEHPNQ SQPSAAVLKP SHPQPQQLPQ  60
PQPHAFKPSQ PPKPQSQPQP PIMLMPMQQP PGPPAAHPSM RPLKPESPRP RPRSNNSEAK  120
DGTPKKQKQC NCKHSRCLKL YCECFASGVY CDGCNCVNCH NNVENEAARR EAVEATLERN  180
PNAFRPKIAS SPHGARDTRE ETGEALILAK HNKGCHCKKS GCLKKYCECF QANILCSDNC  240
KCLDCKNYEG SEERQALFHG DHANNMAYIQ QAANAAITGA IGSSGYGSPP VSKKRKGQEL  300
FFGATVKDPL HRLGQFQQAN HMKTSIPSSS LSSIPGARLG NPAGVGPSKF TYRSLLADII  360
QPQDLKELCS VLVVYSAEAA KMLADEGKAT EKPVQEHRET LVTSTQDQSQ GNKDSSIAEK  420
ASANDKLNGN PAEKITAEES SSDGADISKA RPMSPGTLAL MCDEQDTMFT TASSPNGLMG  480
HDNLSSQLPD GQGLSEAYAE QERIVLTKFR DCLNRLITLG EIKETKFSSF ARTESSNQRD  540
TISNGITGFR VETGNLQQEP FSNGLAKSAI PPSVRASQMV SSAGIDPFPK IPSPTENGDV  600
KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-3112725911132Protein lin-54 homolog
5fd3_B3e-3112725911132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175984.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A068U4910.0A0A068U491_COFCA; Uncharacterized protein
STRINGEOY307460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455