PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20995_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 541aa    MW: 60343.5 Da    PI: 6.6115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20995_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.3e-07129149323
                                           ETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                           C+ CgksFs++  L  H+rtH
  cra_locus_20995_iso_1_len_2056_ver_3 129 CKECGKSFSSSRALAGHMRTH 149
                                           ********************9 PP
2zf-C2H211.90.00068386408123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           ykC+ C+k F+++  L  H ++H
  cra_locus_20995_iso_1_len_2056_ver_3 386 YKCKTCDKIFPSHQALGGHSNRH 408
                                           9**************99999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0171033IPR007087Zinc finger, C2H2
SMARTSM003550.161032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.341127154IPR007087Zinc finger, C2H2
SMARTSM003550.0043127149IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.54E-11128177No hitNo description
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
PfamPF139124.2E-6129150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-8129146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.604.5E-5147179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.012155179IPR007087Zinc finger, C2H2
SMARTSM003550.14155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576676.86E-8384408No hitNo description
PfamPF139129.5E-7386408IPR007087Zinc finger, C2H2
SMARTSM003550.053386408IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245386408IPR007087Zinc finger, C2H2
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
SuperFamilySSF576676.86E-8446473No hitNo description
PROSITE profilePS501579.182451473IPR007087Zinc finger, C2H2
PfamPF139121.2E-9451473IPR007087Zinc finger, C2H2
SMARTSM003550.46451473IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280453473IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEEVVQENKF VCKFCNKRCF SGKSLGGHMR GHLALISAAK KKKVKAESSE SAGGDDHDDD  60
CGIEENSKID HCKVSAEQSN STLIQEKMED SSNLGNEDHD SYGLRENPKK SLKFSDLRLS  120
KAPNTGTLCK ECGKSFSSSR ALAGHMRTHS VKNRHLCDKC RKGFDSRRAL YGHLKSHSKR  180
SRVSTESADG LSEFDIDCPR KKRSVIRYKL TSNLSFSSAN ASSSSGVNEF EEVEAVAMCL  240
MMLSRGVRNW PQEESTDNAV EFKSFHRIKE LSTVTTDDSQ CDADEVYEEK NSRNSCISAS  300
MNSEINEFDS EFDSNNAKKA AEMGVSVDDL PLSELFKKPA KDQVDSELLD SSVPKKKVIL  360
LVHDPLLEVE DTVSEMLKDS MKKREYKCKT CDKIFPSHQA LGGHSNRHKL ISSTAPSTDI  420
SHLSDNNEYN CSTANEPEAI TGCELIKNKE HECPVCFKVF ATGQALGGHK RAHFAGLTES  480
NRVKELNINE ENHEVQEIEK IFDLNLPVTS HQESRVDDAG LNLKLWWAGH GHKREPLVIL  540
N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151144.11e-150uncharacterized protein LOC113751362
TrEMBLA0A068U1891e-134A0A068U189_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231