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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2068_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 508aa MW: 55747.9 Da PI: 7.3229 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.6e-30 | 276 | 334 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+ gCpv+k+v+r+aed +++++tYeg+Hnh+ cra_locus_2068_iso_1_len_1565_ver_3 276 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGvGCPVRKQVQRCAEDRSILITTYEGHHNHP 334 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-33 | 260 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-28 | 268 | 336 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.493 | 270 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-36 | 275 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-26 | 277 | 334 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
DNSYNNQESS SSSSNMRILN SLDDYHQEIA VPRRPVLNEM DFFGNIKKET PAASAAAASC 60 TTAFDHHAHH QLLVNTGLNL HTKGIDDEKS APDHAPPESN KPIKKEFAVL KSEIERMNTE 120 NQRLRAIFEQ VKEKYRALQM HVYQVLNHQQ NPAAAAADAD DHHHHEEEII RKQRLLMIPK 180 EFMGLGQLDI GINDHHRPSK SNNNSDNNSG GGDQNRENNN KKNNNNNSVE DGGGDQEWSP 240 NKTPRLLSND IEQANEATMR KARVSVRARS EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR 300 CTMGVGCPVR KQVQRCAEDR SILITTYEGH HNHPLPPAAM TMASTTSSAA SMLLSGSMPS 360 SDAHQIMNPN PNPNNILTRT LLSCSPNLAA TISASAPFPT ITLDLTNTNS SNILGQKLLS 420 RPNIPFLPQI SNQSQFSGLQ SSQEIMMNAA TAALTSDPSF TAALVAAITS IMGNTTQSSS 480 DKVNNNNSNS GNNSESNNMG INPKSFFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 262 | 338 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015877768.1 | 1e-123 | probable WRKY transcription factor 31 | ||||
Refseq | XP_023921697.1 | 1e-123 | probable WRKY transcription factor 31 | ||||
TrEMBL | A0A1R3J2A2 | 1e-124 | A0A1R3J2A2_9ROSI; DNA-binding WRKY | ||||
STRING | PGSC0003DMT400038852 | 1e-124 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |