PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2068_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 508aa    MW: 55747.9 Da    PI: 7.3229
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2068_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30276334259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                          +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r+aed +++++tYeg+Hnh+
  cra_locus_2068_iso_1_len_1565_ver_3 276 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGvGCPVRKQVQRCAEDRSILITTYEGHHNHP 334
                                          7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33260336IPR003657WRKY domain
SuperFamilySSF1182905.36E-28268336IPR003657WRKY domain
PROSITE profilePS5081129.493270336IPR003657WRKY domain
SMARTSM007742.3E-36275335IPR003657WRKY domain
PfamPF031062.9E-26277334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
DNSYNNQESS SSSSNMRILN SLDDYHQEIA VPRRPVLNEM DFFGNIKKET PAASAAAASC  60
TTAFDHHAHH QLLVNTGLNL HTKGIDDEKS APDHAPPESN KPIKKEFAVL KSEIERMNTE  120
NQRLRAIFEQ VKEKYRALQM HVYQVLNHQQ NPAAAAADAD DHHHHEEEII RKQRLLMIPK  180
EFMGLGQLDI GINDHHRPSK SNNNSDNNSG GGDQNRENNN KKNNNNNSVE DGGGDQEWSP  240
NKTPRLLSND IEQANEATMR KARVSVRARS EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR  300
CTMGVGCPVR KQVQRCAEDR SILITTYEGH HNHPLPPAAM TMASTTSSAA SMLLSGSMPS  360
SDAHQIMNPN PNPNNILTRT LLSCSPNLAA TISASAPFPT ITLDLTNTNS SNILGQKLLS  420
RPNIPFLPQI SNQSQFSGLQ SSQEIMMNAA TAALTSDPSF TAALVAAITS IMGNTTQSSS  480
DKVNNNNSNS GNNSESNNMG INPKSFFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22262338176WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877768.11e-123probable WRKY transcription factor 31
RefseqXP_023921697.11e-123probable WRKY transcription factor 31
TrEMBLA0A1R3J2A21e-124A0A1R3J2A2_9ROSI; DNA-binding WRKY
STRINGPGSC0003DMT4000388521e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492