PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_17919_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 26407.9 Da PI: 8.2241 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.1 | 7.9e-14 | 3 | 92 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk 75 ffkv++p + ++ l lp + + + +e + + ++s +W+v++ k+ + + + kGW +Fv+ ++Lk cra_locus_17919_iso_1_len_701_ver_3 3 FFKVMMP---GFHAKLLLPLASCPKLK--EEIPE-QAFLTSSKGTWRVEV--GKCANDgICFDKGWDNFVEKHDLK 70 6777744...55666899999997774..44553.3556668889*****..777777799*************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 g+fvvF+ ++r+ f v+++++ cra_locus_17919_iso_1_len_701_ver_3 71 MGEFVVFEQVSRMHF--EVSIYDT 92 ********8777888..8888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.687 | 1 | 93 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.85E-16 | 2 | 91 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-17 | 2 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.5E-11 | 3 | 91 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-16 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.8E-10 | 3 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
XRFFKVMMPG FHAKLLLPLA SCPKLKEEIP EQAFLTSSKG TWRVEVGKCA NDGICFDKGW 60 DNFVEKHDLK MGEFVVFEQV SRMHFEVSIY DTTSCKKNPS AVEVPEEQEL LALNGDGHVE 120 HVKRSAAKAL ILMIFIFLLP FFFPREYVEE INEDKATSGP NVHEHAKEAK SGRGRPRRRR 180 SSIEQNESPG DDAIPPSKRG RPSNAAVSTG TNQSDFVKMI CKYNVTRSPS LYIP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |