PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17360_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 456aa MW: 50480.2 Da PI: 9.5976

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17360_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	6.8e-19	26	117	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegek 69 +Wt++e+laLi+a+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ cra_locus_17360_iso_1_len_3042_ver_3 26 CWTQEETLALIDAYRERWYALRRGYLRTADWDAVAAAVtnrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSL 98 8**********************************987776677788999**************999 PP trihelix 70 kr.tsessstcpyfdqlea 87 t + st+ +f++++a cra_locus_17360_iso_1_len_3042_ver_3 99 AFpTGRFFSTWFFFENMDA 117 887889999****9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-19	25	118	No hit	No description
PROSITE profile	PS50090	6.806	27	87	IPR017877	Myb-like domain
SMART	SM00595	1.2E-7	34	123	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MSTATAVVPV AGEALEKPPR KFPPPCWTQE ETLALIDAYR ERWYALRRGY LRTADWDAVA 60 AAVTNRCPDA SPAKTSAQCR HKMEKLRQRY RAEKQRSLAF PTGRFFSTWF FFENMDAMEN 120 GTSVSAVKSN QGEPDNRESS GNGFRLKSLI DQNVVKLKLK PKNATKFDVG LSPNFAIDAG 180 RGKNSSKTID GKANSDFGST ALNEYSPYLD LGSDKEEDEM EFEGGLQPKN QVGGLSVPTT 240 GFRGKNFSKV FGDIRNDFQL GSVGSKGFDA NNLFHAKPLG DPLGDESLLP PRYRAKKLGK 300 IDGRISRALN SVEEQSNANG ANSGLWGRVA SDRNSLPLGG RGKYGANLDA GLDFRGLNGF 360 SIPFDLGVEK KGEGGGGVKR ERDPIDEMVS SIKMLGEGFM KMEKMKMEMA MEIEKNRMEM 420 EMKRNELILD SQRQILDAFI KGVFEAKNKK MKLTDE

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MSTATAVVPV AGEALEKPPR KFPPPCWTQE ETLALIDAYR ERWYALRRGY LRTADWDAVA  60
AAVTNRCPDA SPAKTSAQCR HKMEKLRQRY RAEKQRSLAF PTGRFFSTWF FFENMDAMEN  120
GTSVSAVKSN QGEPDNRESS GNGFRLKSLI DQNVVKLKLK PKNATKFDVG LSPNFAIDAG  180
RGKNSSKTID GKANSDFGST ALNEYSPYLD LGSDKEEDEM EFEGGLQPKN QVGGLSVPTT  240
GFRGKNFSKV FGDIRNDFQL GSVGSKGFDA NNLFHAKPLG DPLGDESLLP PRYRAKKLGK  300
IDGRISRALN SVEEQSNANG ANSGLWGRVA SDRNSLPLGG RGKYGANLDA GLDFRGLNGF  360
SIPFDLGVEK KGEGGGGVKR ERDPIDEMVS SIKMLGEGFM KMEKMKMEMA MEIEKNRMEM  420
EMKRNELILD SQRQILDAFI KGVFEAKNKK MKLTDE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027182635.1	1e-168	protein FIP2-like
TrEMBL	A0A068UIG6	1e-169	A0A068UIG6_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400052836	1e-102	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17