PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16374_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YB | ||||||||
Protein Properties | Length: 205aa MW: 22718.1 Da PI: 8.1736 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 177 | 1.8e-55 | 27 | 122 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 ++qdrflPianvsrimkk lP+nakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlG cra_locus_16374_iso_1_len_670_ver_3 27 KDQDRFLPIANVSRIMKKSLPSNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 100 79************************************************************************ PP NF-YB 76 fedyveplkvylkkyrelegek 97 fe+yv +lkvyl+kyre egek cra_locus_16374_iso_1_len_670_ver_3 101 FENYVVSLKVYLNKYRENEGEK 122 *******************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.9E-53 | 23 | 135 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.83E-41 | 29 | 144 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-27 | 32 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.9E-19 | 60 | 78 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 63 | 79 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.9E-19 | 79 | 97 | No hit | No description |
PRINTS | PR00615 | 1.9E-19 | 98 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTGRRNKNNS SPIGSPLSGD SSSNNNKDQD RFLPIANVSR IMKKSLPSNA KISKEAKETV 60 QECVSEFISF ITGEASDKCQ REKRKTINGD DLLWAMTTLG FENYVVSLKV YLNKYRENEG 120 EKTSMARDHQ DDQDSTPADF HSRKNGYYYS LEGANNYGDP AGRSVFGYGN NIIPAGVFNN 180 NIGKNISEIE GTANRVIATN LSPWG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-48 | 27 | 117 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-48 | 27 | 117 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027179779.1 | 4e-83 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 2e-60 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A068UXD0 | 9e-81 | A0A068UXD0_COFCA; Uncharacterized protein | ||||
STRING | XP_006493850.1 | 8e-72 | (Citrus sinensis) | ||||
STRING | XP_008362436.1 | 7e-72 | (Malus domestica) | ||||
STRING | XP_008368639.1 | 7e-72 | (Malus domestica) | ||||
STRING | XP_004304851.1 | 8e-72 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Publications ? help Back to Top | |||
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