PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16012_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 559aa MW: 62463.3 Da PI: 10.5331

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16012_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.3e-08	43	80	1	41
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 ++rW t+E+++l av ++G+ +W+ +a+++ Rtl c cra_locus_16012_iso_1_len_1902_ver_3 43 KKRWGTWEELILGGAVLRHGTQNWNVVASELR-SRTL--CS 80 68******************************.9998..54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-4	43	80	IPR009057	Homeodomain-like
Pfam	PF00249	6.4E-6	43	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.20.920.10	1.3E-11	310	435	IPR001487	Bromodomain
SMART	SM00297	5.5E-7	336	434	IPR001487	Bromodomain
PROSITE profile	PS50014	9.256	347	415	IPR001487	Bromodomain
Pfam	PF00439	4.0E-9	349	418	IPR001487	Bromodomain
SuperFamily	SSF47370	2.75E-14	361	434	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
XKVGEGGGNL VCSFVPXEVE LFDRGRTRGR REMGTDAMVV EPKKRWGTWE ELILGGAVLR 60 HGTQNWNVVA SELRSRTLCS LYFTPEVCKA KYEDLRKRYS GCTAWFEELR KRRVAELKRA 120 LEKSEDSIGS LESKIESLKT EKRHSNQVHC GSSQTESPAP LVRSDGTDSF GKETSKDGLS 180 AGSFTQDART NWSPDGQNPA VASSPKTSVK PEVSQISDGE KDLTRNEPAE PSNIQGGALR 240 KRRGKRKRKL CNTVGKEASV GESDNLGSTD IFSNSRSKET STSDCDQTIK FSSRDSPNAG 300 SCQIRSDNLM GIFDSVAENK VALVFRHRLD SQVISFYWIH CMFDLFFXYI FSLNICYPKQ 360 KRARYKKIIK QHLDFNLIRS RIASCTIKSS KELFRDLLLL ANNALVFYSK RTREYKSAMA 420 LRDIVLKEYR QHFRSSNNTA TSACLPMRSM YNPPVRPRSA RPRPSKHSGP PAKVRQTEDD 480 IAASPHGFLR RIDLVANVPL QSLLLPKKSP KHPAKIKSGS GDGKEGLKRP AAKVKNLSAA 540 RPQAKSSPGL KDKKGGRQS

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

XKVGEGGGNL VCSFVPXEVE LFDRGRTRGR REMGTDAMVV EPKKRWGTWE ELILGGAVLR  60
HGTQNWNVVA SELRSRTLCS LYFTPEVCKA KYEDLRKRYS GCTAWFEELR KRRVAELKRA  120
LEKSEDSIGS LESKIESLKT EKRHSNQVHC GSSQTESPAP LVRSDGTDSF GKETSKDGLS  180
AGSFTQDART NWSPDGQNPA VASSPKTSVK PEVSQISDGE KDLTRNEPAE PSNIQGGALR  240
KRRGKRKRKL CNTVGKEASV GESDNLGSTD IFSNSRSKET STSDCDQTIK FSSRDSPNAG  300
SCQIRSDNLM GIFDSVAENK VALVFRHRLD SQVISFYWIH CMFDLFFXYI FSLNICYPKQ  360
KRARYKKIIK QHLDFNLIRS RIASCTIKSS KELFRDLLLL ANNALVFYSK RTREYKSAMA  420
LRDIVLKEYR QHFRSSNNTA TSACLPMRSM YNPPVRPRSA RPRPSKHSGP PAKVRQTEDD  480
IAASPHGFLR RIDLVANVPL QSLLLPKKSP KHPAKIKSGS GDGKEGLKRP AAKVKNLSAA  540
RPQAKSSPGL KDKKGGRQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	32	GRTRGRREM
2	95	112	RKRYSGCTAWFEELRKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027161261.1	0.0	uncharacterized protein LOC113762153 isoform X2
TrEMBL	A0A068TUA5	0.0	A0A068TUA5_COFCA; Uncharacterized protein
STRING	XP_009778975.1	1e-148	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5534	19	24