PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15313_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 437aa MW: 49290.4 Da PI: 6.2449 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 276.3 | 9.6e-85 | 50 | 437 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r++r ++++ + + ++ cra_locus_15313_iso_1_len_1469_ver_3 50 EKLLLHCASALESNDVTLAQQVMWVLNNVASPIGDPNQRLTSWFLRALISRVSRVCPSMNLKGNNALQR---- 118 689***************************************************777776555444444.... PP GRAS 75 seelaalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiT 145 + +++++l ++++ P++ f++ + N+aI +a++g ++vHi+Df+i++++QWp+L++aLa+Rp+gppslR+ cra_locus_15313_iso_1_len_1469_ver_3 119 -RLMTVTELagYVDLIPWHMFGFCASNSAIFRAIQGFSKVHILDFSITYCMQWPTLIDALAKRPNGPPSLRLS 190 .22222333449************************************************************* PP GRAS 146 gvgspesg...skeeleetgerLakfAeelgvpfefnvl.........vakrledl........eleeLrvkp 198 + ++ + ++ee+g+rLa+fA+ +vpfef+++ ++++L+++ cra_locus_15313_iso_1_len_1469_ver_3 191 VPLWRPPVppfLNVSTEEVGNRLANFAKFKEVPFEFHLIqedqysssfN------YdlflnqvlNPSTLKLRD 257 96554444568999************************96666433221......0233444459******** PP GRAS 199 gEalaVnlvlqlhrll.......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264 +Eal++n++ l +++ ++ ++ s rd +++ +k+lsP ++++v++++d+++ ++ r++ +++y cra_locus_15313_iso_1_len_1469_ver_3 258 DEALVINCQNWLRYIPdeviingGSHDHMISFRDCFIERMKDLSPCIITLVDEDSDLSAMNLTSRITTCFNYL 330 ****************66666653445555689**************************************** PP GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 + fd+le+ lp++s+ ri +E +g +i+n++ eg++r+er e+ k ++r++ G+ ++p+se+++k++ cra_locus_15313_iso_1_len_1469_ver_3 331 WIPFDALETFLPKDSSLRIEYEGD-IGHKIENIIGFEGSQRIERLESGVKMSQRMRINGLLSLPFSEETVKEV 402 ************************.************************************************ PP GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 k+ll +++ g+ +++e++ lvl+Wk+++ v+++aW cra_locus_15313_iso_1_len_1469_ver_3 403 KSLLDQHA-SGWGMKKEDDMLVLTWKGHNSVFATAW 437 ********.8999*********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.39 | 23 | 419 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-82 | 50 | 437 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
XKTMKAELRG NPTQVSSLQN PSLFNTAQSP STISGTLKGC LGSLDGACIE KLLLHCASAL 60 ESNDVTLAQQ VMWVLNNVAS PIGDPNQRLT SWFLRALISR VSRVCPSMNL KGNNALQRRL 120 MTVTELAGYV DLIPWHMFGF CASNSAIFRA IQGFSKVHIL DFSITYCMQW PTLIDALAKR 180 PNGPPSLRLS VPLWRPPVPP FLNVSTEEVG NRLANFAKFK EVPFEFHLIQ EDQYSSSFNY 240 DLFLNQVLNP STLKLRDDEA LVINCQNWLR YIPDEVIING GSHDHMISFR DCFIERMKDL 300 SPCIITLVDE DSDLSAMNLT SRITTCFNYL WIPFDALETF LPKDSSLRIE YEGDIGHKIE 360 NIIGFEGSQR IERLESGVKM SQRMRINGLL SLPFSEETVK EVKSLLDQHA SGWGMKKEDD 420 MLVLTWKGHN SVFATAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-56 | 20 | 437 | 65 | 472 | Protein SHORT-ROOT |
5b3h_B | 3e-57 | 20 | 437 | 11 | 418 | Protein SHORT-ROOT |
5b3h_E | 3e-57 | 20 | 437 | 11 | 418 | Protein SHORT-ROOT |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027061119.1 | 0.0 | scarecrow-like protein 32 isoform X1 | ||||
Refseq | XP_027063837.1 | 0.0 | scarecrow-like protein 32 isoform X1 | ||||
Refseq | XP_027172563.1 | 0.0 | scarecrow-like protein 32 isoform X1 | ||||
Refseq | XP_027172609.1 | 0.0 | scarecrow-like protein 32 isoform X1 | ||||
TrEMBL | A0A068UW46 | 0.0 | A0A068UW46_COFCA; Uncharacterized protein | ||||
STRING | EOX99208 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10303 | 22 | 27 |