PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14743_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 570aa MW: 66084.5 Da PI: 5.3177

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14743_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.1	1.4e-29	418	503	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 rW+k ev aLi++r++ e+++++ lk+ lWee+s+ m++ gf+rs+k+Ckekwen+nk++kk ke+ +k++ cra_locus_14743_iso_1_len_1801_ver_3 418 RWPKAEVEALIQIRSRFETNFQEPGLKGLLWEEISNEMAKMGFQRSAKRCKEKWENINKYFKKSKENPIKERR 490 8********************************************************************** PP trihelix 74 essstcpyfdqle 86 ++ +tc yfdql+ cra_locus_14743_iso_1_len_1801_ver_3 491 QKLKTCEYFDQLD 503 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-5	408	474	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.48	411	475	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.79E-5	413	482	IPR009057	Homeodomain-like
SMART	SM00717	0.0015	415	477	IPR001005	SANT/Myb domain
CDD	cd12203	1.86E-25	417	482	No hit	No description
Pfam	PF13837	2.3E-21	417	505	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
XRPSPIFNFN HNNNPYNYHQ FFQQFQNLPT THEFFNYQPH LIQPCTTTFE QQQYQEQQQI 60 RRFRTISIAT GSGAGVQLDF KSPPPPDLNE NSRFKNGGGG GRNQEDGGGN LVGGEQQQYV 120 PEVETRLEPS RCWENREDSA VRQPFWKQFC PDISEAKNIE RGIIEAKDKD QEEQPEMNQN 180 QNHHEDYNHD FDEETVQNSC LEAGKSRLFG ELEAICGHAS SSSCIGKSNH HHKSAAGSLI 240 INGGETLAEG TCLAPPALDQ SNHLNNASSD QTLDEVEEDE PFSRMVKKKR KKREKMKDDE 300 ISSMAQLFER LVKQLMDHQE ILYKKFVDMI ERIDKERKDR EEAWRKQESE VASKAHERTL 360 LASSSTKESS SNVFEYLERI TGKSMNLISP PIRDHEPPLE LSNNRSRNNV DQNVMSKRWP 420 KAEVEALIQI RSRFETNFQE PGLKGLLWEE ISNEMAKMGF QRSAKRCKEK WENINKYFKK 480 SKENPIKERR QKLKTCEYFD QLDQLYSKAQ EKGYYNIKEV DFEGSSNYGK FQVKKNHDDN 540 NHEEADHEDL VGQTEEGEEE DNKGESGHEE

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

XRPSPIFNFN HNNNPYNYHQ FFQQFQNLPT THEFFNYQPH LIQPCTTTFE QQQYQEQQQI  60
RRFRTISIAT GSGAGVQLDF KSPPPPDLNE NSRFKNGGGG GRNQEDGGGN LVGGEQQQYV  120
PEVETRLEPS RCWENREDSA VRQPFWKQFC PDISEAKNIE RGIIEAKDKD QEEQPEMNQN  180
QNHHEDYNHD FDEETVQNSC LEAGKSRLFG ELEAICGHAS SSSCIGKSNH HHKSAAGSLI  240
INGGETLAEG TCLAPPALDQ SNHLNNASSD QTLDEVEEDE PFSRMVKKKR KKREKMKDDE  300
ISSMAQLFER LVKQLMDHQE ILYKKFVDMI ERIDKERKDR EEAWRKQESE VASKAHERTL  360
LASSSTKESS SNVFEYLERI TGKSMNLISP PIRDHEPPLE LSNNRSRNNV DQNVMSKRWP  420
KAEVEALIQI RSRFETNFQE PGLKGLLWEE ISNEMAKMGF QRSAKRCKEK WENINKYFKK  480
SKENPIKERR QKLKTCEYFD QLDQLYSKAQ EKGYYNIKEV DFEGSSNYGK FQVKKNHDDN  540
NHEEADHEDL VGQTEEGEEE DNKGESGHEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	292	KKKRKKR
2	287	291	KKRKK
3	289	294	RKKREK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11622	9	11