PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1467_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 375aa MW: 41781.2 Da PI: 8.7418

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1467_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.4e-12	173	220	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ +++ L +++P + kKl+Ka++L A++Y+ +Lq cra_locus_1467_iso_1_len_1197_ver_3 173 QDHVLAERKRREKLTERIVALSTMVPGL-----KKLDKASVLGGAIKYLEQLQ 220 56999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.964	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-10	173	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	174	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-16	175	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.29E-11	175	224	No hit	No description
SMART	SM00353	1.4E-13	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
LPTIFPRNYS FSQARRILGK LSKMDLLGAH EWFSQLEVTD HDEWQMKSNS NNFNTNSSAA 60 YYCSSNESIQ AASHQAQKKS PLLTSPHHHQ KKKMDFISFG GNNNNNNYSN SSAAAKSYGK 120 ACNNIVKTED TMMSLNGDLN FSSSIHQYYE TILEEEAGVN NKRVCNRTAL QAQDHVLAER 180 KRREKLTERI VALSTMVPGL KKLDKASVLG GAIKYLEQLQ ERIKMLEAEK RELLEEQSAN 240 NNNNNLNNNN MSSLISKRPR ISVSSDEISS SAGEISYCST PGGQPPLSSP EIEVRISEKT 300 DVLVRVYCKK RNGVIKDILS EIEKLHLSIM SSSVIPFGTS ILNITVIAQM DGDSVCLSAQ 360 NIASNLRTAI QKLMQ

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

LPTIFPRNYS FSQARRILGK LSKMDLLGAH EWFSQLEVTD HDEWQMKSNS NNFNTNSSAA  60
YYCSSNESIQ AASHQAQKKS PLLTSPHHHQ KKKMDFISFG GNNNNNNYSN SSAAAKSYGK  120
ACNNIVKTED TMMSLNGDLN FSSSIHQYYE TILEEEAGVN NKRVCNRTAL QAQDHVLAER  180
KRREKLTERI VALSTMVPGL KKLDKASVLG GAIKYLEQLQ ERIKMLEAEK RELLEEQSAN  240
NNNNNLNNNN MSSLISKRPR ISVSSDEISS SAGEISYCST PGGQPPLSSP EIEVRISEKT  300
DVLVRVYCKK RNGVIKDILS EIEKLHLSIM SSSVIPFGTS ILNITVIAQM DGDSVCLSAQ  360
NIASNLRTAI QKLMQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	ERKRRE
2	179	184	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018817560.1	2e-59	PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBL	A0A2I4EDT9	4e-58	A0A2I4EDT9_JUGRE; transcription factor bHLH18-like isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1760	24	61