PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13182_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 710aa    MW: 76362.6 Da    PI: 5.6482
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13182_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.5e-194101196
                                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHH CS
                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFv 69 
                                           f+k l+ sd+++ grlvlpkk+ae++   ++++e++ l+++d +g++W++++++  +++s++yvl+ G     
  cra_locus_13182_iso_1_len_2556_ver_3   4 FQKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGIPLKIKDIKGKEWTFQFRFwpNNNSRMYVLE-GITPCI 75 
                                           89**************************556668889***************9989999999***9.****** PP

                                           HHHT--TT-EEEEEE-SSSEE..EEEE CS
                                    B3  70 kangLkegDfvvFkldgrsefelvvkv 96 
                                           ++ +L++gD v+F++ +  e++lv+++
  cra_locus_13182_iso_1_len_2556_ver_3  76 QSMQLQAGDYVTFSRLE-PEGKLVMGF 101
                                           **************665.566566554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-202101IPR015300DNA-binding pseudobarrel domain
CDDcd100177.59E-232103No hitNo description
Gene3DG3DSA:2.40.330.106.6E-292104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.4624105IPR003340B3 DNA binding domain
PfamPF023625.0E-164101IPR003340B3 DNA binding domain
SMARTSM010195.0E-214105IPR003340B3 DNA binding domain
PROSITE profilePS5105014.065267317IPR011124Zinc finger, CW-type
PfamPF074962.8E-12272314IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
XPLFQKMLSA SDAGRIGRLV LPKKCAEAYF PPISNPEGIP LKIKDIKGKE WTFQFRFWPN  60
NNSRMYVLEG ITPCIQSMQL QAGDYVTFSR LEPEGKLVMG FKKASTIPSD QGNETCMPRR  120
ELSSNGDVAG ESQKAGESSK PSEVVSTNGQ TKSAAASCSF PPKLTGESQS TPSKTDGPGN  180
LPKEGCEAIS PGRTKRRNGT LGLKGKRVRI ENEDNVDLEV SWEQVQGLLR PPPDKEPTVY  240
EIDGFEIEEY EEPPVIGRPT IPVVDELGQN MQWVQCEDCF KWRKLPSDAR LPARWTCSMN  300
SWDSERSLCS AVEELSAEEL EALLPTMNKD DSKKTKAPPK QDSDAVEALE GLDALAHLAV  360
QEKAGRSLPA SSQSTTKHPR HRVGCSCIVC IQPPSGKGPK HKQPCECVVC KSVKRRYRTL  420
MMKREKKQSE KESEASQELQ PQQLPEQVLN VDGGNKSPTE ETPSDGGIDD NNADEKCSAA  480
TSKSQIDLNI QPVKEDEQPP RFDTGSLAQL IINARERQHM QQRLSALGIG GDVGNQAHQD  540
GVGRLDAGNS VACLGHEAHR DGVGHPDAGN AVALVGNNQA HQDGVVRPDA GNSIALVGNN  600
NQAHQDGVVR PDAGNSVALV GNQAHHDGVG HLDAGNSVGL VGNQAHEDGF GRPDAGTSAA  660
LVGNQAHPDA GNNCVDVDNG SKKTDDVHKS PSKEVVSSSS SQPADGPSTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-57211222132B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027111695.10.0B3 domain-containing protein Os07g0563300-like isoform X2
RefseqXP_027159886.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G41e-165Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A068TUI90.0A0A068TUI9_COFCA; Uncharacterized protein
STRINGcassava4.1_001573m0.0(Manihot esculenta)
STRINGXP_009616960.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126