PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11711_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 289aa MW: 31257.3 Da PI: 5.7031

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11711_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	9.9e-11	161	208	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq cra_locus_11711_iso_2_len_1149_ver_3 161 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 208 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.96E-10	155	212	No hit	No description
SuperFamily	SSF47459	6.41E-18	155	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-18	157	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-8	161	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDPPIINEAS FSAANPSSYS LAELWPFPIS GAGTGNGDLG GLGLRMGSFG GFRGDATTVS 60 VDESTVTEQS ASHGASAGRK RKDFNSEDES SKPVSTSSAN DLNNSCAKRM KESRAKEENG 120 DSKVEGETSS ETGKKANEQG KPEPPKDYIH VRARRGQATD SHSLAERARR EKISERMKIL 180 QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRMNPTIE GFHSKDLAAP 240 TFDATGMIFS SQAPREYAQG THPEWLHMQV GGSFDRATXQ ADPDQNLGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563548.1	1e-141	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	6e-90	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1U8G4D0	1e-139	A0A1U8G4D0_CAPAN; transcription factor bHLH79
TrEMBL	A0A2G3AW72	1e-139	A0A2G3AW72_CAPCH; Transcription factor bHLH79
STRING	XP_006476705.1	1e-138	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]