PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11684_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 287aa MW: 31623.7 Da PI: 5.7612

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11684_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.1e-30	87	144	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY++eHnh+ cra_locus_11684_iso_4_len_1662_ver_3 87 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTKLLITYSSEHNHS 144 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-30	78	146	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-26	80	146	IPR003657	WRKY domain
PROSITE profile	PS50811	31.571	80	146	IPR003657	WRKY domain
SMART	SM00774	3.4E-35	85	145	IPR003657	WRKY domain
Pfam	PF03106	3.6E-25	87	143	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MVKKSSGFFV HHHHQQQQXX XXEDDSTTST DQENNFNDSH LSGDEAYEVD DAPSPKKRKG 60 AQKRVISVAI GEGDGSRNRT EVYPPPDSWS WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR 120 KQVERSRLDP TKLLITYSSE HNHSLPTTTK HHHITTPATT ANVATPAADS TSTSSSSKAT 180 NKSEEFGVFA NRPEIDSDNS SSFSEFAGEL GWFSDVGSSS IVLESSPMLV GPNWVDADVA 240 LMLPIGEEDQ SLFGDLGELP ECSVVFRRAI VVDEKELVYS GFHFDGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	63	147	6	80	Disease resistance protein RRS1
5w3x_D	1e-19	63	147	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065103.1	1e-109	probable WRKY transcription factor 69
Swissprot	Q93WV5	2e-63	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A068V5W4	1e-104	A0A068V5W4_COFCA; Uncharacterized protein
STRING	XP_009593761.1	3e-93	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]