PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10511_iso_10
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 431aa    MW: 46997.1 Da    PI: 8.5057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10511_iso_10genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.4e-124772227
                                           -S---SGGGGTS--TTTTT-SS-SSS CS
                                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                           +++ C+++ rtG C+yG++C+F+H+p
  cra_locus_10511_iso_10_len_3000_ver_3 47 GEPDCSYYIRTGLCRYGATCRFNHPP 72
                                           6899********************97 PP
2zf-CCCH38.91.5e-1293117327
                                            S---SGGGGTS--TTTTT-SS-SSS CS
                                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                            +++C+++++tGtCk+G++CkF+H++
  cra_locus_10511_iso_10_len_3000_ver_3  93 QPECQYYLKTGTCKFGATCKFHHPR 117
                                            799********************96 PP
3zf-CCCH35.91.3e-11141163527
                                            --SGGGGTS--TTTTT-SS-SSS CS
                                zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                             C +++rtG+Ck+G++CkF+H++
  cra_locus_10511_iso_10_len_3000_ver_3 141 DCAYYLRTGHCKFGSTCKFHHPQ 163
                                            7********************97 PP
4zf-CCCH38.71.7e-12291317127
                                            --S---SGGGGTS--TTTTT-SS-SSS CS
                                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                            +++++C+f+++tG Ck+G+ CkF+H++
  cra_locus_10511_iso_10_len_3000_ver_3 291 PGQPECQFYMKTGDCKFGAVCKFHHPR 317
                                            5789*********************96 PP
5zf-CCCH40.25.7e-13337363127
                                            --S---SGGGGTS--TTTTT-SS-SSS CS
                                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                            ++++lC f++r+G+Ck+G++CkF H++
  cra_locus_10511_iso_10_len_3000_ver_3 337 PGEPLCIFYSRYGICKFGPSCKFDHPM 363
                                            589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2394573IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-64572IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-84772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-45171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.35690118IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-690117IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-596117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422136164IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6140164IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502290318IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6290317IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5294319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4296318IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709336364IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10338363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5339363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4341361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDFDAGIPIS RASVTEGPSS LDQDALWQMN LRSRETIESG GYPVREGEPD CSYYIRTGLC  60
RYGATCRFNH PPNRKLAIAT ARMRGEYPER VGQPECQYYL KTGTCKFGAT CKFHHPRDKA  120
GIAGKVTLNI LGYPLRPNEI DCAYYLRTGH CKFGSTCKFH HPQPANMMVS LRGSAVYPPV  180
QSPTNAGQLS YPRASFIPSP RWQGPSSYAP MLLPQGMVSV PGWSAYSGQV ASGSSSENLQ  240
QTSGSTQTLG TSRQSEAANF ESQGTHSSYP SASVPMGYYA LQREAVFPER PGQPECQFYM  300
KTGDCKFGAV CKFHHPRERV IPAPDCVLSS IGLPLRPGEP LCIFYSRYGI CKFGPSCKFD  360
HPMGVFTYNL PSSSTEVPAV RRLLASSSSG SATLTLASEG LIEASSSKAR RLPLSEARKM  420
PSGDASIDPE E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087150.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A068U9F40.0A0A068U9F4_COFCA; Uncharacterized protein
STRINGXP_004302155.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439