PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold16133-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 234aa MW: 24150.6 Da PI: 8.2862

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold16133-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.5e-39	23	83	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k augustus_masked-scaffold16133-abinit-gene-0.0-mRNA-1 23 EQEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAK 81 57899****************************************************98 PP zf-Dof 61 ss 62 +s augustus_masked-scaffold16133-abinit-gene-0.0-mRNA-1 82 RS 83 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	2	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	25	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MPSDSSEQRR QNKPQNSGAP PAEQEQLPCP RCDSTNTKFC YYNNYNFSQP RHFCKSCRRY 60 WTHGGTLRDI PVGGGSRKNA KRSRTTSHTM SSTSSQDPLS ATPVLVPLGS NHGASVQFGL 120 GGNGGGSDKG NVNVCGTFTS LLNTQGPGFL ALGGFGLGLG TGFEEMGFGL GRAVWPFPGV 180 ADGGGVAGGG GGGNAGATGM GNTWQFENGE SGFVGGDCFS WPDLAISTPG NGLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023926619.1	1e-118	dof zinc finger protein DOF3.4
Swissprot	Q39088	3e-66	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A2N9J9V6	1e-117	A0A2N9J9V6_FAGSY; Uncharacterized protein
STRING	POPTR_0007s11790.1	3e-98	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-51	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]