PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold09768-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 207aa    MW: 21741 Da    PI: 4.9677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold09768-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-183787155
                                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                                          + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  augustus_masked-scaffold09768-abinit-gene-0.0-mRNA-1 37 PVYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTPEMAAVAYDVAALALKG 87
                                                          68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-113787IPR001471AP2/ERF domain
PROSITE profilePS5103222.7743895IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-213897IPR016177DNA-binding domain
SMARTSM003803.1E-3438101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-303897IPR001471AP2/ERF domain
PRINTSPR003674.1E-113950IPR001471AP2/ERF domain
CDDcd000184.63E-313997No hitNo description
PRINTSPR003674.1E-117797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MQHYPQSAAN TSSSSSSSSS NASVTAGAAP PASGRHPVYR GVRRRSSGKW VSEIREPRKP  60
NRIWLGTFPT PEMAAVAYDV AALALKGQNA ELNFPNSASS LPVPASTSPR DIQAAAASAA  120
SAIGAAASAI GAGIDVSTGN EGHVAQHTGE MQQPMFGEFV DEDLIFDMPN VLVNMAEGMM  180
LSPPRYDIAG DAENTEDHSD QNLWKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1636971274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915965.11e-115ethylene-responsive transcription factor ERF024
SwissprotQ9SJR09e-58ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A2I4DZU52e-91A0A2I4DZU5_JUGRE; ethylene-responsive transcription factor ERF024-like
STRINGcassava4.1_031718m5e-84(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-47ERF family protein