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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold09652-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | AP2 | ||||||||
Protein Properties | Length: 547aa MW: 60411.2 Da PI: 6.5624 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.3e-15 | 162 | 221 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkk 52 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k augustus_masked-scaffold09652-abinit-gene-0.0-mRNA-1 162 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALK 218 57*******************666664477446************************ PP AP2 53 leg 55 ++g augustus_masked-scaffold09652-abinit-gene-0.0-mRNA-1 219 YWG 221 *98 PP | |||||||
2 | AP2 | 47.1 | 6e-15 | 266 | 315 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g augustus_masked-scaffold09652-abinit-gene-0.0-mRNA-1 266 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 315 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.68E-17 | 162 | 231 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.07E-23 | 162 | 231 | No hit | No description |
Pfam | PF00847 | 7.1E-12 | 162 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-30 | 163 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 163 | 229 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-16 | 163 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 164 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.22E-24 | 264 | 323 | No hit | No description |
SuperFamily | SSF54171 | 6.41E-18 | 264 | 324 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-32 | 265 | 329 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 265 | 323 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 265 | 323 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-9 | 266 | 315 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 305 | 325 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MNSNNWLSFP LSPTHSSLPA HLQTSQSHHF SLGLGNDTMD NPFQSQEWNM INTHGSSEVP 60 KVADFLGVSK SENQSDLVAF NEIQANDSDY LFQSSSLVPV QNTVVPTTSN YEFQENANSL 120 QSLTLSMGSG KASTCETSGD NSTNTVETTP RRTLDTFGQR TSIYRGVTRH RWTGRYEAHL 180 WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GTSTTTNFPI SNYEKELEEM 240 KHMTRQEFVA SIRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE 300 EAAEAYDIAA IKFRGLNAVT NFDMNRYDVK SILESNTLPI GGGAAKRLKE AQAIESSRKR 360 EEMIALGSSF QYGSSSSSRL QPYPLLQHQP FDQPQPLLTL QNHDISPYTA QDPSFHQSYI 420 QTQLQLHQQS AGSYLHQSSQ NNGSQFYNSY LQNHPALLQG LMNMGSSSSS VIENNGSSSG 480 SYSGGGYLGN GLNAMATDSP SGNAVGSTAD ELALVKVDYD MPSGGYGSWS GETVQGSNPS 540 VFTMWND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023907398.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 isoform X1 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2I4DK15 | 0.0 | A0A2I4DK15_JUGRE; AP2-like ethylene-responsive transcription factor PLT2 | ||||
STRING | EOY32584 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |