PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold04899-abinit-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 322aa MW: 35234.2 Da PI: 9.0548

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold04899-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F+++ L H++ H augustus_masked-scaffold04899-abinit-gene-0.3-mRNA-1 124 FSCNFCQRKFPTSQALGGHQNAH 146 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.45E-6	121	151	No hit	No description
PROSITE profile	PS50157	11.177	124	151	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	126	146	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MKAHNNSHHE PCASEASSIS ATSEGPPSHK KELGVDESNK IMIMKMKEKF SKVFDHADQP 60 PSLGSGSSHV LLDLKLSSDD LNRGSSKKEL NLFDSMNSSS SLVPVEPTSD EKSPEKSPDE 120 SRRFSCNFCQ RKFPTSQALG GHQNAHKRER ALAKRRQGMD NMGAFGHPHH FPYYPYSNLS 180 TNPLYGSFNR SSSSPLGVRM ESMIHKPSFA WSSSPGHGYR YGHGGGWSRQ TLMNPQPSMD 240 RLRIEGSMAH NGAIGLAGGN SIPTTKFDEI STNALRNFGG SSTVATSNID INSKPTITGG 300 DYLRREDPPK NDALELDLSL KL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023889703.1	0.0	uncharacterized protein LOC112001758
TrEMBL	A0A2N9IKW2	1e-117	A0A2N9IKW2_FAGSY; Uncharacterized protein
STRING	POPTR_0025s00650.1	8e-74	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	4e-24	C2H2 family protein