PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold03687-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 263aa MW: 29357.7 Da PI: 6.5922

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold03687-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.2	8.8e-09	89	135	4	50
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + + +r NReA r++R++Kka ++ Lee+vk+L N++L +l+ augustus_masked-scaffold03687-abinit-gene-0.0-mRNA-1 89 SSKPKRQSGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVRKLQ 135 556788899*********************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	78	153	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.1E-11	82	154	No hit	No description
PROSITE profile	PS50217	8.519	88	135	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.5E-12	89	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.5E-7	92	136	No hit	No description
CDD	cd14686	1.51E-10	93	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MIETINDGEV EPSDNVQLSN PDSSIDFPAT TSFDSFLDDL LKNTRTCTHT HTCNPPGPEA 60 AHTHTCYHSH TQVLSSQEDE QPNNKKKTSS KPKRQSGNRE AVRKYREKKK AHTAYLEEEV 120 KKLRLLNQQL VRKLQGQTVL EAEVLRLRSL FLDLRGKIDH ELGIFPFQKQ CNGTTMYKEG 180 DCGVQSTDGA IGLQCQTNLT CPHPNTGTSS QSGVGNESRK MRVSWEENCQ PTIIDCSTNE 240 MVNTKGQTME TVETLGSSES QAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023897190.1	1e-165	basic leucine zipper 23-like
Refseq	XP_023897191.1	1e-165	basic leucine zipper 23-like
Swissprot	Q8GTS2	2e-54	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2N9FPC0	1e-127	A0A2N9FPC0_FAGSY; Uncharacterized protein
STRING	Gorai.012G081200.1	1e-107	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2567	32	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	5e-44	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]