PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03263-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 308aa    MW: 33026.1 Da    PI: 7.4727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03263-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015119141123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           y+C+ C++ F++   L  H  +H
  augustus_masked-scaffold03263-abinit-gene-0.2-mRNA-1 119 YECKTCNRAFPSFQALGGHRASH 141
                                                           99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-8118141No hitNo description
PfamPF139122.7E-12119143IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.926119146IPR007087Zinc finger, C2H2
SMARTSM003550.13119141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-8205232No hitNo description
PfamPF139124.4E-12210234IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224210237IPR007087Zinc finger, C2H2
SMARTSM003550.045210232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEGQEEVAVM GSNGHTQIVK GKRTKRQRPL SPFDLALTSS SSSVGLAGSG NTSDYASISS  60
PSAGTNCEVD VYESTEEEED MANCLILLAK GVGPRQSPEL ATTTTTTATT TTKSGFYIYE  120
CKTCNRAFPS FQALGGHRAS HKKPKPMIEE KKAAPTATVT PPSTEYVEEA QINIRNNCTT  180
SAPPKYVQIG AAPNKALINT NNNNNKTKIH ECSICGLEFM SGQALGGHMR RHRSAVAASP  240
SQMVTMGVET TVSTTMESKH VEIKPRRNIL SLDLNLPAPE DDSKFQFTSA AAQQSLVFSA  300
SALVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875953.10.0zinc finger protein ZAT5-like
TrEMBLA0A2N9ELP01e-118A0A2N9ELP0_FAGSY; Uncharacterized protein
STRINGVIT_06s0061g00760.t015e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-56C2H2 family protein