PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 208aa MW: 22515.3 Da PI: 8.413 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00082 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1 41 FQCKTCDRCFPSFQALGGHRASH 63 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1 114 HECSICGAEFSSGQALGGHMRRH 136 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.0E-10 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.44E-9 | 41 | 63 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.44E-9 | 109 | 136 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-4 | 112 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.7E-13 | 113 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 114 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MANCLILLAQ GHSRKVSSSE PVATTNSDKA AAAAAAGSYA FQCKTCDRCF PSFQALGGHR 60 ASHKKLKANA EEKKLVTVVD EEDVHRFNST STTLSLQTAN RVQCNSNNNK VKVHECSICG 120 AEFSSGQALG GHMRRHRTFI SSTATTMSVG ASSPDQSLEA KKQKNDILQL DLNLPAPEDD 180 QRADSKFSFM SKERVLVFSA SSLVDCHY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023888979.1 | 1e-135 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2N9IZW5 | 2e-93 | A0A2N9IZW5_FAGSY; Uncharacterized protein | ||||
STRING | XP_006493540.1 | 4e-79 | (Citrus sinensis) | ||||
STRING | XP_006428462.1 | 3e-79 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 3e-45 | C2H2 family protein |