PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01968-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 338aa    MW: 37831.3 Da    PI: 5.103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01968-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-173784148
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                          rg W++eEde+lv +++ +G g+W+++++  g+ R++k+c++rw +yl
  augustus_masked-scaffold01968-abinit-gene-0.4-mRNA-1 37 RGLWSPEEDEKLVTYITAHGLGSWSSVPKFAGLQRCGKSCRLRWINYL 84
                                                          788*******************************************97 PP
2Myb_DNA-binding52.51.1e-1690133146
                                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                           rg +T eE+++++d+++  G++ W+ Ia++++ gRt++++k++w++
  augustus_masked-scaffold01968-abinit-gene-0.4-mRNA-1  90 RGTFTSEEEQIIIDVHRIVGNK-WAQIAKHLP-GRTDNEVKNFWNS 133
                                                           899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-252987IPR009057Homeodomain-like
PROSITE profilePS5129417.2373284IPR017930Myb domain
SuperFamilySSF466891.08E-2934131IPR009057Homeodomain-like
SMARTSM007174.9E-123686IPR001005SANT/Myb domain
PfamPF002491.1E-143784IPR001005SANT/Myb domain
CDDcd001671.09E-104084No hitNo description
PROSITE profilePS5129426.25585139IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2688140IPR009057Homeodomain-like
SMARTSM007172.2E-1589137IPR001005SANT/Myb domain
PfamPF002496.3E-1590133IPR001005SANT/Myb domain
CDDcd001671.89E-1192132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MINTKPNSSA EEEEEEALTI SEKMGGHRCC SKQKVKRGLW SPEEDEKLVT YITAHGLGSW  60
SSVPKFAGLQ RCGKSCRLRW INYLRPDLKR GTFTSEEEQI IIDVHRIVGN KWAQIAKHLP  120
GRTDNEVKNF WNSCIKKKLI SQGLDPNTHN LIPSHQRASK KVACNVPPND QQPNSVFTLN  180
SQFTDASTFE MKTPIITVPE ADQPPLLQNP NLVWNQSFTD FSSFPHVSSV ESTPNISSSS  240
SSSVNLSGFG VLNHENCVWG ANTLEPFEAP GLEGEQYTLT QPQQEKDKVS EMLANKVIHQ  300
PMDTSFDGSS FDLGFVESSL MSDIMYDDLS SMDDFAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29371397108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899099.10.0transcription factor MYB41-like
TrEMBLA0A2N9ECE10.0A0A2N9ECE1_FAGSY; Uncharacterized protein
STRINGcassava4.1_025617m1e-126(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-86myb domain protein 67