PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01414-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 299aa    MW: 33484.8 Da    PI: 4.7219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01414-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.9e-07172216655
                                                           HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                                   HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                                           +++ r RR++i ++ +eL +l+P         +l+ ae+   A +Y+k+Lq
  augustus_masked-scaffold01414-abinit-gene-0.4-mRNA-1 172 SIAARERRRKITEKTQELGKLIPGgH------RLNTAEMFHAAFNYVKYLQ 216
                                                           67889******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-8169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-6169218No hitNo description
SuperFamilySSF474595.1E-9170223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-5172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALSFCTNWD MTSFQPELAA DLLSCDYNLA LAQENYQLGS HFEQSDESPL YHVDSYTNLL  60
PYFSAAPSDN LITSGIHSPE MFLLDESYSY QYPKRLRTST YGGGNSNYDY SNFTPGFYDG  120
YVLKPGNLLP DSMPEVMAQF LVSSGNYGCG SSTSSPQSSV KKPMKVSLSA QSIAARERRR  180
KITEKTQELG KLIPGGHRLN TAEMFHAAFN YVKYLQAQAL VLQLMGSIQE IKEEPITNYA  240
REELQALIAS PIIQEKLSSE EKCLVPKEFV QILADDKEVQ LKPFIVKDID QLLQTKTDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923610.10.0transcription factor bHLH52-like
TrEMBLA0A2N9IVI42e-99A0A2N9IVI4_FAGSY; Uncharacterized protein
STRINGPOPTR_0011s16100.14e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-34bHLH family protein