PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00552-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 266aa    MW: 29772 Da    PI: 9.4962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00552-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18107157256
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                                            y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  augustus_masked-scaffold00552-abinit-gene-0.6-mRNA-1 107 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 157
                                                           59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.98E-16106166No hitNo description
SMARTSM003803.6E-36107170IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22107164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-31107165IPR001471AP2/ERF domain
PROSITE profilePS5103223.235107164IPR001471AP2/ERF domain
PfamPF008479.5E-13108157IPR001471AP2/ERF domain
PRINTSPR003674.0E-10108119IPR001471AP2/ERF domain
PRINTSPR003674.0E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDTNQDQNIP FTNTGGADIR SSLSQLILTG GTSTLDSIFS HCSPSNAITN PVFEPLGSSV  60
YLHQRDLLQK LWQENRPSSL LNHTFLKTPL QSSVCTSSYK SPCKKKLYRG VRQRHWGKWV  120
AEIRLPQNRM RVWLGTYETA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPS KLGFGDCARL  180
NALKSSVDAK IQAICQKVKR EKAKKNAKKS IECPIAMALA EESGLEGCSL EKMPSFDPEL  240
IWEVLADQRR FVSVYGGFGG DDVRSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21104164263ATERF1
3gcc_A5e-21104164263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889897.11e-131ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W26e-60ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2N9GBL71e-113A0A2N9GBL7_FAGSY; Uncharacterized protein
STRINGEMJ105811e-100(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.18e-55ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]